Pairwise Alignments

Query, 355 a.a., putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 381 a.a., tRNA-specific 2-thiouridylase MnmA from Phaeobacter inhibens DSM 17395

 Score =  138 bits (348), Expect = 2e-37
 Identities = 116/365 (31%), Positives = 174/365 (47%), Gaps = 20/365 (5%)

Query: 3   IAALLSGGVDSSVVVHLLCEQGYKPTLFYIKIGMDGAEYMD---CSAEEDIEMSTAIARK 59
           +   +SGGVDSSVV   L ++GY      +++   GA       C A  DI  +  +A +
Sbjct: 23  VVVAMSGGVDSSVVAAHLADEGYDVVGVTLQLYDHGAALAKKGACCAGIDIHDARRVAEE 82

Query: 60  YGLSLEVVDLHKEYWENVAAYAIDKIKKGLTPNPDVMCNKLIKF-GCFEQQVGKNFDFTA 118
            G    V+D    + + V     D    G TP P + CN+ +KF    E       D  A
Sbjct: 83  RGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRCNERVKFKDLLETARDLEADCMA 142

Query: 119 TGHYATTIRQDGKTW--LGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGL-MKQEVREIA 175
           TGHY    R+DG     L +A+D  +DQ+ FL      Q+  L FP+G L  K   RE+A
Sbjct: 143 TGHYIQ--RKDGPNGPELHSAEDANRDQSYFLFSTTPEQLDYLRFPLGHLPSKDATREMA 200

Query: 176 SRAGLPSARRKDSQGICFLGKINYNDFVRRFL-GEREGAIIELETGKKVGTHRGYWFHTI 234
           S+ GL  A + DSQ ICF+   +Y   + +   G  E   I    G+ +GTH G   +TI
Sbjct: 201 SQYGLAVADKPDSQDICFVPNGDYASVIEKLRPGAAEPGEIVHSDGRVLGTHDGVIHYTI 260

Query: 235 GQRKGLGLSG--GPWFVIKKDVEENIIYVSHGYGVETQFGSEFRINDFHFITENPWKDAG 292
           GQR+GLG+ G   P +V+K DV+   + V     + T+      + + +++ + P+  + 
Sbjct: 261 GQRRGLGIGGLSEPLYVVKLDVDTKQVVVGPKELLATR---TIPVREINWLGDEPF-TSR 316

Query: 293 KEIDITFKIRHT--PEFTKGKLVQEEGGQFRILSSEKLQGIAPGQFGVIYDEEAGICVGS 350
            E  +  K+R T  P     + + E   +  +L+ E  +GI+PGQ  V Y EE     G 
Sbjct: 317 DEWHLKVKVRSTRPPRDAIIRPISETEAEVELLTPE--EGISPGQACVFYAEEGSRIFGG 374

Query: 351 GEITR 355
           G I R
Sbjct: 375 GWIWR 379