Pairwise Alignments

Query, 301 a.a., putative permease (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 474 a.a., permease (RefSeq) from Shewanella loihica PV-4

 Score = 58.2 bits (139), Expect = 4e-13
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 2/119 (1%)

Query: 180 LRPIMIYLLIGVALGAGIYGYMPQDFVLKIAGADNPLAIPVAAVLGIPLYIRAETAIPIG 239
           +R   ++LLIG+   A +  Y+P DF+ K    D  LA+ V  ++ +P+YI A  + PI 
Sbjct: 302 VRDTTVWLLIGLFFAALVQTYVPGDFMAK--WGDGILAMLVMVLISVPMYICATASTPIA 359

Query: 240 IALMGKGMSIGAVIALVIGGAGMAIPEMSMLASIFKKKLVGMIVAVIFLTAVIAGYVFN 298
             L+  G+S GAV+  ++ G    I  + ++     K+ +   +  +   A++AG + N
Sbjct: 360 AGLLLAGVSPGAVLVFMLAGPATNIATLGVVTKELGKRALYGYLGGVLGVALVAGVLVN 418



 Score = 55.1 bits (131), Expect = 3e-12
 Identities = 27/88 (30%), Positives = 46/88 (52%)

Query: 8  LQYFVFITIELIALFLLISAAVEIILMYIPEETIRKKLSGSGIMGNVIAAGFGALTPFCA 67
          L  F+ + ++     LL      ++ M++P   ++K+L G G+   + AA  GA  P C+
Sbjct: 3  LSNFIDLFLDSAPWLLLGLVLAGMLKMFVPMTWMQKQLGGHGVKTTIKAAVLGAPLPLCS 62

Query: 68 CSTIPMTVGFLNAGVPFGSTMSFLIASP 95
          C  IP  VG   +G    +T SFL+++P
Sbjct: 63 CGVIPAAVGLRRSGASKAATTSFLVSTP 90



 Score = 45.1 bits (105), Expect = 3e-09
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 11/123 (8%)

Query: 18  LIALFLLISAAVEIILMYIPEETIRKKLSGSGIMGNVIAAGFGALTPFCACSTIPMTVGF 77
           LI LF        ++  Y+P + + K   G GI+  ++          CA ++ P+  G 
Sbjct: 310 LIGLFF-----AALVQTYVPGDFMAKW--GDGILAMLVMVLISVPMYICATASTPIAAGL 362

Query: 78  LNAGVPFGSTMSFLIASPLLNPIIIGMLGALVGFKAMVFY----FVIAFICSVAFGYVLE 133
           L AGV  G+ + F++A P  N   +G++   +G +A+  Y      +A +  V   Y++ 
Sbjct: 363 LLAGVSPGAVLVFMLAGPATNIATLGVVTKELGKRALYGYLGGVLGVALVAGVLVNYLVA 422

Query: 134 KIG 136
             G
Sbjct: 423 TFG 425



 Score = 36.2 bits (82), Expect = 2e-06
 Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 10/114 (8%)

Query: 186 YLLIGVALGAGIYGYMPQDFVLKIAGADNPLAIPVAAVLGIPLYIRAETAIPIGIALMGK 245
           +LL+G+ L   +  ++P  ++ K  G         AAVLG PL + +   IP  + L   
Sbjct: 16  WLLLGLVLAGMLKMFVPMTWMQKQLGGHGVKTTIKAAVLGAPLPLCSCGVIPAAVGLRRS 75

Query: 246 GMSIGAVIALVIGGAGMAIPEMSMLASIFKKKLVGMIVAVI-----FLTAVIAG 294
           G S  A  + ++     + PE  + +      L+G  +AV+       +A++AG
Sbjct: 76  GASKAATTSFLV-----STPETGIDSVSVSYVLLGPFMAVVRPIAAVTSAIVAG 124