Pairwise Alignments

Query, 301 a.a., putative permease (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 338 a.a., permease (RefSeq) from Shewanella loihica PV-4

 Score =  149 bits (375), Expect = 1e-40
 Identities = 86/305 (28%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 8   LQYFVFITIELIALFLLISAAVEIILMYIPEETIRKKLSGSG-IMGNVIAAGFGALTPFC 66
           L +FV  T ++ AL +++   +  +   +  E +R  L+G   ++G  + AGFGA+TPFC
Sbjct: 29  LHFFVEDTSKIFALLVVMIYLIGWLRAALNVERVRDYLAGKPKLLGYGLGAGFGAITPFC 88

Query: 67  ACSTIPMTVGFLNAGVPFGSTMSFLIASPLLNPIIIGMLGALVGFKAMVFYFVIAFICSV 126
           +CS+IP+ +GF  AG+P G TM+FL+ SPL+N + I +L +L+G K  + Y +      +
Sbjct: 89  SCSSIPVFLGFTTAGIPVGITMAFLLTSPLINEVAILLLFSLLGAKITLLYALTGITIGM 148

Query: 127 AFGYVLEKIGAQK---------YVKNVRVKPSCCSGSEQPKNKRLLP---FRQKIKIAFI 174
             G +L+ + A++         Y +      +  S S+        P   +RQ+ + A  
Sbjct: 149 LGGALLDLLHAERWLQPLAANAYRRGATQTQTTASASDTYTPDESTPGISWRQRHQFAKQ 208

Query: 175 NAWGSLRPIMIYLLIGVALGAGIYGYMPQDFVLKIAGADNPLAIPVAAVLGIPLYIRAET 234
                   +  +++IGV +GA ++G++P  ++    G     ++P+A ++GIPLY  A  
Sbjct: 209 ETLTIFGRVWKWVIIGVGIGAALHGFVPAGYLEANLGDGQWWSVPIAVLMGIPLYANATG 268

Query: 235 AIPIGIALMGKGMSIGAVIALVIGGAGMAIPEMSMLASIFKKKLVGMIVAVIFLTAVIAG 294
            IP+  +L+ +G+ +G  +A  +     + PE  ML  + + +L+ ++ A++ +   + G
Sbjct: 269 VIPVLESLLIQGVPLGTTLAFCMSTVAASFPEFVMLKQVMQWRLLALLFALLLVAFTLMG 328

Query: 295 YVFNL 299
           +V NL
Sbjct: 329 WVLNL 333