Pairwise Alignments

Query, 301 a.a., putative permease (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 365 a.a., permease (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 48.1 bits (113), Expect = 3e-10
 Identities = 22/97 (22%), Positives = 50/97 (51%), Gaps = 5/97 (5%)

Query: 16  IELIALFLLISAAVEIILMYIPEETIRKKLSGSGIMGNVIAAGFGALTPFCACSTIPMTV 75
           +  + L  L+SA +E+   ++P   + +++  S           G + P C C  +P+  
Sbjct: 20  LPFLVLGSLVSACMEV---FVPRAWVERRVPKSLPGALAFGVALGTVLPTCECGVVPVVR 76

Query: 76  GFLNAGVPFGSTMSFLIASPLLNPIIIGMLGALVGFK 112
             +  GVP  + +++++A+P++NP++  M+   V F+
Sbjct: 77  RMMGKGVPVPAAVAYMLAAPVVNPVV--MVSTWVAFR 111



 Score = 33.1 bits (74), Expect = 1e-05
 Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 9/136 (6%)

Query: 161 RLLPFRQKIKIAFINAWGSLRPIMIYLLIGVALGAGIYGYMPQDFVLKIAGADNPLAIPV 220
           RL+   Q     F+ A       + +L++G  + A +  ++P+ +V +      P A+  
Sbjct: 4   RLIHLAQTALAVFLEA-------LPFLVLGSLVSACMEVFVPRAWVERRVPKSLPGALAF 56

Query: 221 AAVLGIPLYIRAETAIPIGIALMGKGMSIGAVIALVIGG--AGMAIPEMSMLASIFKKKL 278
              LG  L       +P+   +MGKG+ + A +A ++        +   + +A      +
Sbjct: 57  GVALGTVLPTCECGVVPVVRRMMGKGVPVPAAVAYMLAAPVVNPVVMVSTWVAFRGDMLM 116

Query: 279 VGMIVAVIFLTAVIAG 294
            G+  AV+  TAV  G
Sbjct: 117 TGLRAAVVAATAVAVG 132



 Score = 25.4 bits (54), Expect = 0.002
 Identities = 19/82 (23%), Positives = 33/82 (40%)

Query: 55  IAAGFGALTPFCACSTIPMTVGFLNAGVPFGSTMSFLIASPLLNPIIIGMLGALVGFKAM 114
           I A  G       CS     V     G P  + ++F+   P+L+  ++ M GA      +
Sbjct: 281 IPALMGLAVLLSVCSEADAFVAASFVGFPASARLAFVALGPMLDLKLMAMYGAAFRRGLV 340

Query: 115 VFYFVIAFICSVAFGYVLEKIG 136
           +   V+  +C  A   +L  +G
Sbjct: 341 LRLVVLPTLCVWAACMLLAGLG 362