Pairwise Alignments

Query, 301 a.a., putative permease (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 358 a.a., permease (RefSeq) from Shewanella sp. ANA-3

 Score =  219 bits (558), Expect = 7e-62
 Identities = 129/350 (36%), Positives = 190/350 (54%), Gaps = 59/350 (16%)

Query: 4   LLDTLQYFVFITIELIALFLLISAAVEIILMYIPEETIRKKLSGSGIMGNVIAAGFGALT 63
           L +T+  FVF+  EL  LFL IS  V ++  +I  + ++  LS     G ++AA  G++T
Sbjct: 9   LKETVNMFVFLAFELTLLFLAISYLVGMLQEFITPQKVQSILSSRHGRGYIVAALLGSIT 68

Query: 64  PFCACSTIPMTVGFLNAGVPFGSTMSFLIASPLLNPIIIGMLGALVGFKAMVFYFVIAFI 123
           PFC+CSTIP   G L A   FG  M FL ASPLLNP+IIG+     GFK  +FYF +A  
Sbjct: 69  PFCSCSTIPFLKGLLRARAGFGPMMVFLFASPLLNPVIIGLFVVTFGFKVALFYFTVALG 128

Query: 124 CSVAFGYVLEKIGAQKYVKN--------------VRVKPS-------------------- 149
            SV  GY+LEK+G ++YV+                  KPS                    
Sbjct: 129 VSVIAGYLLEKLGFEQYVRQEAYAQADTATAASCCDTKPSPTASSGCEVTPAPVVSACCD 188

Query: 150 ---------------------CCSGSEQPKNKRLLPFRQKIKIAFINAWGSLRPIMIYLL 188
                                CC     P+NK   P  + +K+ +   W   + ++ YL 
Sbjct: 189 SKTAPAVTLCCVTQAEPIATSCCPSQTVPQNK---PQSRWVKV-WRATWKDFKQVLPYLF 244

Query: 189 IGVALGAGIYGYMPQDFVLKIAGADNPLAIPVAAVLGIPLYIRAETAIPIGIALMGKGMS 248
           IGV LG+ IYG+MP + +++ AG     AIP+AA++GIPLYIRAE  IP+  AL+ KGM+
Sbjct: 245 IGVLLGSMIYGFMPTELIVQYAGEATWYAIPIAALIGIPLYIRAEAVIPLSAALIQKGMA 304

Query: 249 IGAVIALVIGGAGMAIPEMSMLASIFKKKLVGMIVAVIFLTAVIAGYVFN 298
           +G+V+AL+IG AG ++ E+ +L +IFK +++   ++VI   AV AG++++
Sbjct: 305 MGSVMALIIGSAGASLTEVILLKAIFKGQMIAAFLSVILGMAVGAGFLYS 354