Pairwise Alignments

Query, 268 a.a., conserved hypothetical protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 460 a.a., transposase IS4 family protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 71.6 bits (174), Expect = 3e-17
 Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 30/243 (12%)

Query: 28  AYNVQSVVDSQHHLIGAMQVTDHPNDFE--DLQPSIHAMQEDLQVEVSQAVADTGYANEE 85
           AY+   ++D+ H +I  +  +      E   ++  +   ++   V+     ADT Y + +
Sbjct: 222 AYSDNYLIDTDHGIIVDVDASRSNKTAEVGAMRKMLDRTEDRFGVKPDWIAADTAYGSSD 281

Query: 86  QI--LALEEEGKVIAVPFNEGDHSPKEDREHGIF----FTYDADNDYYICSQEKIL---- 135
            +  LAL+ +       F++G+      R  G F    FT+D +ND YIC   K +    
Sbjct: 282 NLVWLALKRQILPFIPVFDKGE------RTDGTFSRSDFTWDDENDRYICPSGKEMRHTW 335

Query: 136 -----PIKDRQVRKHGKIYRKYQGR--DCKGCPLIKFCTTSKKGRIIYRRADAEPIRQYM 188
                P ++    K     R+Y+ R  DC GC L   C  + + R I+R    E +R + 
Sbjct: 336 RTYSDPARNAPAWKA----RRYRTRKSDCTGCALKAKCCPNSEVRAIHREK-YEIVRDFA 390

Query: 189 KKCKGMKYKALIRLRKTWVEHPFGTLKYWMGQIPLLLRGKEKVQAEIDLYATCYNLRRVT 248
           ++C   +Y    + R+  VE  F  LK  +G   L LRG   VQ E  L AT  NLR++ 
Sbjct: 391 RQCTASEYNPTAQRRRKKVEMLFAHLKRILGLGRLRLRGPCGVQDEFTLAATAQNLRKLA 450

Query: 249 NIQ 251
            ++
Sbjct: 451 KLK 453