Pairwise Alignments

Query, 339 a.a., 16S rRNA (cytidine(1402)-2'-O)-methyltransferase from Bifidobacterium breve UCC2003

Subject, 311 a.a., 16S rRNA methyltransferase from Herbaspirillum seropedicae SmR1

 Score =  172 bits (437), Expect = 8e-48
 Identities = 108/283 (38%), Positives = 156/283 (55%), Gaps = 9/283 (3%)

Query: 48  PAGTVVLAATPIGNVGDASARLVAFLERADIVAAEDTRRLFDLARRLGVYVNGRVVAYHD 107
           P   + + ATPIGNV D S R +  L  AD VA EDTR    L +R G+  +  ++A H+
Sbjct: 21  PVSALYVLATPIGNVCDISLRGLHLLSIADAVACEDTRNTSQLLQRYGL--SRPLLATHE 78

Query: 108 HNERDKADGLLDQVETGATVLVVSDAGMPTINDPGLAIVRRAIERGLPVTCAPGPSAVLD 167
           HNER+ A  +++++  G  V +VSDAG P ++DPG  +V      GL V   PG SA + 
Sbjct: 79  HNEREAAAKIIERLHAGQRVALVSDAGTPAVSDPGARVVDAVRAAGLRVIPLPGASAAIT 138

Query: 168 ALALSGLPTDRFCYEGFLPRKHAERVQYLRTLLGERRTIVFYETPHRIADSMDDLLDAFG 227
           AL+ SGL  +RF + GFLP K  +R   L+ L+     +VFYE PHRI +++  LL  FG
Sbjct: 139 ALSASGLTDERFHFVGFLPAKTRQRETALQELVELPAALVFYEAPHRIVETVQSLLQVFG 198

Query: 228 PNRPMALCRELTKDYEQIRRGPIGEIRQSVIDDP--PRGEMVLVIGGASSEEAEAAAPST 285
           P R + L RELTK +E I R  +GE    +  D    RGE V+++ GA   E + A    
Sbjct: 199 PQRQVVLARELTKLFEDIHRCSLGEAPDWLAQDANRQRGEFVILVEGAPVTEGDGAEAER 258

Query: 286 LSVEDMAVLAIDRALEDGLRIKDAIAQVVQEHPLADGSLANRK 328
           +    +A L + +A     +I       V+++ L D +LA R+
Sbjct: 259 VLRILLAELPVRQAAALAAQITG-----VKKNALYDRALAIRQ 296