Pairwise Alignments

Query, 601 a.a., ABC transporter ATP-binding protein from Bifidobacterium breve UCC2003

Subject, 604 a.a., lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq) from Shewanella loihica PV-4

 Score =  304 bits (779), Expect = 6e-87
 Identities = 183/514 (35%), Positives = 274/514 (53%), Gaps = 12/514 (2%)

Query: 83  LIVIYELALRYRTVAITRVGQLMLKDMRRDLFTHIQTLPFSYFDSRPHGKILIRVVNYVN 142
           L  +  LA    T  I+ +   M+ DMR+ +F H   LP SY D+   G ++ RV     
Sbjct: 95  LFTLRGLANFLSTYGISYISARMIMDMRQQVFEHYLRLPVSYIDAESSGNLISRVTFDTE 154

Query: 143 TLSDALSSGLINVFSDIFTFFVTLIVMFAIDWQLALWSLVLFPVLIIWVRVLQYFQRKAY 202
            ++ A  S LI +  D  T    L VMF   W+L+L  L++ P++ + + V+    RK  
Sbjct: 155 QIARASGSALITIVRDGITVIGMLGVMFYNSWKLSLCILIVGPLIGLVIAVVSRKFRKVS 214

Query: 203 QVLSNKQSNLNAFIHESIAGVKTTQTFAREKEQFDTFQQQQDDVRTAWMAAKHIEFLMWP 262
           + +      + +   + I G K    F  ++ +   F +  DD R+  M     + +  P
Sbjct: 215 KQIQTAMGGVTSVTEQMIKGHKNVLVFGGQQAESQRFAKVNDDNRSRTMKLALAQAISQP 274

Query: 263 GVQTISVMTIAFIYFVGITGFGGVSVTTGMLIAFVGYANNFWNPVINI----GNFYNQLV 318
            V  I  + +AF+ +          +T G     +        P+ ++      F   + 
Sbjct: 275 LVMVIGSLALAFVLYASSLESMRADLTAGTFATILAAMLAMLQPIKSLTRVNAEFQRGIA 334

Query: 319 TCSAYLERIFETLDVKPEIANKPGATELPAIQGKVDFNDVVFRYEDDGRNILNLVDFHVT 378
            CS     IF  LD   E+ N  G  E   ++G++ F+ V FRY +     L  VDF V 
Sbjct: 335 ACST----IFAVLDTPAEVDN--GTFETKRVEGRLSFDKVNFRYNNQEGLALKEVDFQVN 388

Query: 379 PGKTIALVGPTGAGKTTIVSLLSRFY-DVSEGSVTIDGHDVRDVTLESLRRQMGVMLQDT 437
           PG+T+ALVG +G+GK+TI SL++RFY D+  G + +D   +RD  L +LRRQ+ ++ Q  
Sbjct: 389 PGETLALVGRSGSGKSTIASLITRFYSDLDSGDIRLDDVSLRDYKLAALRRQVALVSQQV 448

Query: 438 FIFSGNVRDNIRYGKL-DATDEEIEAAAKAVHAHEFIMELPDGYDTTVEERGSTLSAGQR 496
            + +  +  NI Y    + T+E+I  AAK  +A EFI  +P+G  T V E G  LS GQR
Sbjct: 449 TLINDTIAANIAYAYPGEVTEEQIIDAAKLANAWEFICNMPEGIYTQVGENGVMLSGGQR 508

Query: 497 QLIAFARVLLADPRILILDEATSNIDTRTEEALQAGLRHLLKGRTSFIIAHRLSTIENAD 556
           Q IA AR +L D  ILILDEATS +DT +E+A+Q GL +L + RTS +IAHRLST+ENA+
Sbjct: 509 QRIAIARAILRDAPILILDEATSALDTESEKAIQTGLDNLRQNRTSIVIAHRLSTVENAN 568

Query: 557 QIFYIDHGQIVEHGTHAELLEAKGAYYRLYESQY 590
           QI  +D G++VE GTH+ELL  +G YY LY+ Q+
Sbjct: 569 QILVVDQGKVVERGTHSELLAKQGIYYNLYQMQF 602