Pairwise Alignments

Query, 540 a.a., diaminopimelate decarboxylase from Bifidobacterium breve UCC2003

Subject, 414 a.a., diaminopimelate decarboxylase (RefSeq) from Shewanella amazonensis SB2B

 Score = 99.0 bits (245), Expect = 3e-25
 Identities = 84/246 (34%), Positives = 115/246 (46%), Gaps = 25/246 (10%)

Query: 294 LELVGAHSHIGSNIHDADAFIHAAKRMMLLRKTLWATDAYILPEIDLGGGYSVAYTDGED 353
           L + G   HIGS + +   F+ A  RM+ L   L A    ++   D+GGG  V Y +GE 
Sbjct: 191 LAVKGVDCHIGSQLTELKPFLDAMDRMLALIDRL-AEQGIVIEHFDVGGGLGVTY-NGET 248

Query: 354 SMDIDVELTRLAGSVSDTNRALGMPAPAISFEPGRYIVAPAGVTLYRVGTIKHVHLSDAK 413
               DV    +   ++      G P   I FEPGR I A AG+ + +V     ++  D  
Sbjct: 249 PPHPDVYAAAILEKLN------GRPLKLI-FEPGRAIAANAGIFVTQV-----LYTKDNG 296

Query: 414 DSAGNPIDERVYVSVDGGMSDNIRPALYGADYTARLANRTGSTETMLARVCGMHCESGDI 473
           D          +V VDG M+D IRP+LYGA      A +T    T    V G  CE+GD 
Sbjct: 297 DKR--------FVIVDGAMNDLIRPSLYGAWQNIIPAVKTNEPTTR-CDVVGPVCETGDF 347

Query: 474 VVHEVRLPADLKRGDILAVPVTGAYGRTMASNYNQALIPAVVAVSEQGAHVMLRRQTIDD 533
           +  +  L A    GD+L V   GAYG TMASNYN     A + V    A+V+  R+ +  
Sbjct: 348 LGKDRELAAG--SGDLLVVRSAGAYGFTMASNYNTRPRAAELMVDGDKAYVVREREKLSQ 405

Query: 534 LLDLDQ 539
           L   +Q
Sbjct: 406 LWQGEQ 411



 Score = 72.0 bits (175), Expect = 4e-17
 Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 6/176 (3%)

Query: 29  LLDEFGSPLYLIDTDEVSACAKHFVRAAAEAFNTSATH-VSFAGKAFLSKEIVRLVAEAG 87
           L  E G+PLY+     +      F  A A     S  H + +A KA  +  ++ ++A  G
Sbjct: 21  LAAEHGTPLYVYSRATLERHWHAFDGAVA-----SHPHLICYAVKANSNLAVLNVLARLG 75

Query: 88  MFVDTCTMGEMRIALAAGVPGRRLVLHGNNKSDDEIALAIEQGFAKIVVDEPNEPERIAA 147
              D  + GE+   L AG    ++V  G  K+  E+ LA+  G     ++   E E +  
Sbjct: 76  SGFDIVSGGELSRVLEAGGDPAKVVFSGVGKTVAEMELALNTGIMCFNLESGAELELLNE 135

Query: 148 IARKLGKRARVMLRVTVGVHAGGHEYISTAHEDQKFGVPLLAAGADAAVLDVLNNL 203
           +A +LGK A V LRV   V AG H YIST  ++ KFG+P+  A A  A    L NL
Sbjct: 136 VAGRLGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIPMEEAEALFARAAALPNL 191