Pairwise Alignments

Query, 540 a.a., diaminopimelate decarboxylase from Bifidobacterium breve UCC2003

Subject, 421 a.a., diaminopimelate decarboxylase LysA from Phaeobacter inhibens DSM 17395

 Score =  101 bits (252), Expect = 5e-26
 Identities = 77/247 (31%), Positives = 121/247 (48%), Gaps = 24/247 (9%)

Query: 294 LELVGAHSHIGSNIHDADAFIHAAKRMMLLRKTLWATDAYILPEIDLGGGYSVAYTDGED 353
           L+++G   HIGS + +   F  A +++  L + L A D + +  +DLGGG  + YT   D
Sbjct: 191 LKVIGIDVHIGSQLTELAPFELAYQKVAELTEQLRA-DGHDIHRLDLGGGLGIPYTRSND 249

Query: 354 SMDIDVELTRLAGSVSDTNRALGMPAPAISFEPGRYIVAPAGVTLYRVGTIKHVHLSDAK 413
           +  + VE   +        R LG     I  EPGR I   AG+ + +V  +K        
Sbjct: 250 TPPLPVEYGAMV------QRTLGHLGCEIEIEPGRLIAGNAGIMVSKVIYVKSG------ 297

Query: 414 DSAGNPIDERVYVSVDGGMSDNIRPALYGADYT-ARLANRTGSTETMLARVCGMHCESGD 472
                  ++R ++ +DG M+D IRPA+Y A +    +   +   E     + G  CE+GD
Sbjct: 298 -------EDRDFLIIDGAMNDLIRPAMYEAYHDIVPVIEPSAGVEQRAYDIVGPVCETGD 350

Query: 473 IVVHEVRLPADLKRGDILAVPVTGAYGRTMASNYN-QALIPAVVAVSEQGAHVMLRRQTI 531
                  +P  L+ GD++A    GAYG  MAS YN + LIP V+   +Q A V+ RR   
Sbjct: 351 TFARHRDMPP-LEAGDLVAFRSAGAYGAVMASEYNSRPLIPEVLVNGDQFA-VIRRRPDF 408

Query: 532 DDLLDLD 538
           D++++ D
Sbjct: 409 DEMINRD 415



 Score = 84.0 bits (206), Expect = 1e-20
 Identities = 55/157 (35%), Positives = 82/157 (52%), Gaps = 4/157 (2%)

Query: 34  GSPLYLIDTDEVSACAKHFVRAAAEAFNTSATHVSFAGKAFLSKEIVRLVAEAGMFVDTC 93
           G+P YL  T   +   +HF     +A       V +A KA  ++ I++ +A+AG  +D  
Sbjct: 26  GTPFYLYST---ATLLRHF-NLFDDALKGMDHLVCYAMKAASNQAILKTLAQAGAGMDVV 81

Query: 94  TMGEMRIALAAGVPGRRLVLHGNNKSDDEIALAIEQGFAKIVVDEPNEPERIAAIARKLG 153
           + GE   A AAGVPG R+V  G  K+ DEI  A+  G  +  V+   E + I A+A +LG
Sbjct: 82  SQGEYLRAKAAGVPGDRIVFSGVGKTQDEIRTALSGGIRQFNVESEPEMDVINAVALELG 141

Query: 154 KRARVMLRVTVGVHAGGHEYISTAHEDQKFGVPLLAA 190
             A + +RV   V A  H  I+T   + KFG+P+  A
Sbjct: 142 VVAPITVRVNPDVDAKTHAKIATGKSENKFGIPIARA 178