Pairwise Alignments

Query, 540 a.a., diaminopimelate decarboxylase from Bifidobacterium breve UCC2003

Subject, 421 a.a., diaminopimelate decarboxylase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  112 bits (279), Expect = 4e-29
 Identities = 87/262 (33%), Positives = 126/262 (48%), Gaps = 27/262 (10%)

Query: 280 SIAVLKTILANQDVLELVGAHSHIGSNIHDADAFIHAAKRMMLLRKTLWATDAYILPEID 339
           S+A L+ ILA  D + L G + HIGS   + + ++ AA  ++ + +     +      ID
Sbjct: 176 SLAELRAILARHD-MTLAGINQHIGSLFLEPEGYVAAADFLLSVAEKFDTVEV-----ID 229

Query: 340 LGGGYSVAYTDGEDSMDIDVELT--RLAGSVSDTNRALGMPAPAISFEPGRYIVAPAGVT 397
            GGG+ + Y   ED   +D+  T  RL   +S  +   G        EPGRY+VA  G+ 
Sbjct: 230 FGGGFGIPYRKYEDQPRLDLAATAERLHALISGWSERTGYKG-RFYIEPGRYVVAECGLL 288

Query: 398 LYRVGTIKHVHLSDAKDSAGNPIDERVYVSVDGGMSDNIRPALYGADYTARLANRTGSTE 457
           L  V   K+            P     YV  D G +   RP +Y A +   +    G+ +
Sbjct: 289 LGTVHATKN----------NGPTR---YVGTDLGFNVLARPVMYDAHHDIEVYRNNGTPD 335

Query: 458 TML--ARVCGMHCESGDIVVHEVRLPADLKRGDILAVPVTGAYGRTMASNYNQALIPAVV 515
             L    V G  CESGDI+  E +LPA ++ GDIL V   GAYG  M+S YNQ L PA V
Sbjct: 336 AALHPQTVVGNICESGDIMARERQLPA-IQEGDILGVLDAGAYGYAMSSTYNQRLRPAEV 394

Query: 516 AVSEQGAHVMLRRQTIDDLLDL 537
            +   G   ++RR+  ++L DL
Sbjct: 395 LIGLDGEPRLIRRR--EELADL 414



 Score = 75.9 bits (185), Expect = 3e-18
 Identities = 60/199 (30%), Positives = 97/199 (48%), Gaps = 12/199 (6%)

Query: 18  AIAFHGRTA-ESLLDEFGSPLYLIDTDEVSACAKHFVRAAAEAFNTSATHVSFAGKAFLS 76
           A+ F GRT  E L   FGSPLY+       A  +   R      +     V+++ KA  +
Sbjct: 11  AVGFFGRTTPEELAAAFGSPLYVYS----EALLRKRCRDMKALSSHPGFFVNYSAKANTN 66

Query: 77  KEIVRLVAEAGMFVDTCTMGEMRIALAAGVPGRRLVLHGNNKSDDEIALAIEQGFAKIVV 136
             ++R+V E G+ VD  + GE+ +  AAG    +++   NN S+ E+A A+  G   + V
Sbjct: 67  LSLLRIVREEGLVVDAMSPGEIHVNKAAGFTPDQILYVCNNVSEAELANAVSHGLL-VSV 125

Query: 137 DEPNEPERIAAIARKLGKRARVMLRVTVGVHAGGHEYISTAHEDQKFGVPLLAAGADAAV 196
           D  ++ E +     ++ +  +VM+R   G+ AG H+ + TA +  KFGV    + A  A 
Sbjct: 126 DSLSQLETLG----RVNRGGKVMVRFNPGIGAGHHQKVVTAGKATKFGVD--PSEASLAE 179

Query: 197 LDVLNNLTDVTPAATNARI 215
           L  +    D+T A  N  I
Sbjct: 180 LRAILARHDMTLAGINQHI 198