Pairwise Alignments

Query, 540 a.a., diaminopimelate decarboxylase from Bifidobacterium breve UCC2003

Subject, 416 a.a., diaminopimelate decarboxylase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 97.1 bits (240), Expect = 1e-24
 Identities = 66/203 (32%), Positives = 104/203 (51%), Gaps = 15/203 (7%)

Query: 17  GAIAFHGRTAESLLDEFGSPLYLIDTDEVSACAKHFVRAAAEAFNTSATHVS----FAGK 72
           G +   G     L   +G+PLY+      +   +HF     +AF+++ T V     ++ K
Sbjct: 9   GQLYAEGVPVHELASRYGTPLYVYSA---ATLRRHF-----QAFDSAFTGVGHLTCYSVK 60

Query: 73  AFLSKEIVRLVAEAGMFVDTCTMGEMRIALAAGVPGRRLVLHGNNKSDDEIALAIEQGFA 132
           A  +  ++RL+A+ G  +D  + GE+  ALAAGVPG+R+V  G  K DDEI  A+E    
Sbjct: 61  ANSNVHLLRLLADMGAGMDIVSGGELHRALAAGVPGQRIVYSGVGKQDDEIRAALEADIL 120

Query: 133 KIVVDEPNEPERIAAIARKLGKRARVMLRVTVGVHAGGHEYISTAHEDQKFGVPLLAAGA 192
              V+   E ERI A+A ++G+ AR+ +R+   V    H YIST   + KFG+ +  A  
Sbjct: 121 LFNVESVQELERINAVAGQMGRTARIGVRINPDVDPKTHPYISTGMRNNKFGLDMEQA-- 178

Query: 193 DAAVLDVLNNLTDVTPAATNARI 215
             A   +  +L +V P   +  I
Sbjct: 179 -LAAYLLARDLPNVQPVGIDCHI 200



 Score = 92.0 bits (227), Expect = 4e-23
 Identities = 75/239 (31%), Positives = 117/239 (48%), Gaps = 24/239 (10%)

Query: 297 VGAHSHIGSNIHDADAFIHAAKRMMLLRKTLWATDAYILPEIDLGGGYSVAYTDGEDSMD 356
           VG   HIGS +     F+ A  R++   + L      I   +DLGGG  + Y  GE++  
Sbjct: 194 VGIDCHIGSQLTTLAPFLEALDRVLDFHERLRDLGLAIT-HLDLGGGLGITY--GEETPP 250

Query: 357 IDVELTRLAGSVSDTNRALGMPAPAISFEPGRYIVAPAGVTLYRVGTIKHVHLSDAKDSA 416
              E      +VS+  R  G+   ++  EPGR I   AG+    VG + +   + +K+  
Sbjct: 251 HPREFGE---AVSERLRGRGL---SLILEPGRVIAGNAGIL---VGRVIYTKSTPSKN-- 299

Query: 417 GNPIDERVYVSVDGGMSDNIRPALYGADYTARLANRTGSTETMLARVCGMHCESGDIVVH 476
                   ++  D  M+D +RP+LY + +        G  E + A V G  CESGD +  
Sbjct: 300 --------FIIADAAMNDLVRPSLYQSYHRIAEVQPAGRDE-ITADVVGPICESGDFLAR 350

Query: 477 EVRLPADLKRGDILAVPVTGAYGRTMASNYNQALIPAVVAVSEQGAHVMLRRQTIDDLL 535
           +  LP D+++G++LAV   GAYG +M+SNYN     A V V    A  + +R+T+ DL+
Sbjct: 351 DRILP-DMQQGELLAVFSAGAYGFSMSSNYNSRPRAAEVLVDGATARCIRKRETLADLV 408