Pairwise Alignments

Query, 540 a.a., diaminopimelate decarboxylase from Bifidobacterium breve UCC2003

Subject, 431 a.a., diaminopimelate decarboxylase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 94.0 bits (232), Expect = 1e-23
 Identities = 56/163 (34%), Positives = 92/163 (56%), Gaps = 4/163 (2%)

Query: 28  SLLDEFGSPLYLIDTDEVSACAKHFVRAAAEAFNTSATHVSFAGKAFLSKEIVRLVAEAG 87
           ++ D  G+P Y+  T   +   +HF +   EA +     V FA K+  ++ I++L+A+ G
Sbjct: 20  AIADAVGTPFYVYST---ATLTRHF-KLFDEALSWGPHLVCFAMKSNSNQAILKLLADLG 75

Query: 88  MFVDTCTMGEMRIALAAGVPGRRLVLHGNNKSDDEIALAIEQGFAKIVVDEPNEPERIAA 147
             +D  + GE   A AAGVPG R+V  G  K+ DE+ +A+  G  +  V+   E +R++A
Sbjct: 76  AGMDVVSGGEYARARAAGVPGDRIVFSGVGKTADEMRMALTGGIRQFNVESEPEMQRLSA 135

Query: 148 IARKLGKRARVMLRVTVGVHAGGHEYISTAHEDQKFGVPLLAA 190
           +A+ LG +A + +RV   V A  HE I+T   + KFG+P+  A
Sbjct: 136 VAQGLGMQAPITIRVNPDVDAKTHEKIATGKSENKFGIPISRA 178



 Score = 89.7 bits (221), Expect = 2e-22
 Identities = 72/247 (29%), Positives = 117/247 (47%), Gaps = 24/247 (9%)

Query: 294 LELVGAHSHIGSNIHDADAFIHAAKRMMLLRKTLWATDAYILPEIDLGGGYSVAYTDGED 353
           ++++G   HIGS + + + F  A  ++  L + L A D + +  +DLGGG  + Y    +
Sbjct: 191 IKVIGIDVHIGSQLTELEPFELAYAKVAELTRHLRA-DGHEITRLDLGGGLGIPYARTNE 249

Query: 354 SMDIDVELTRLAGSVSDTNRALGMPAPAISFEPGRYIVAPAGVTLYRVGTIKHVHLSDAK 413
           +  +  +   L        R +G     I  EPGR I   AG+ +  V  +K        
Sbjct: 250 APPLPTDYGALI------QRTVGDLGCEIEIEPGRLISGNAGLLVSEVIYVKQG------ 297

Query: 414 DSAGNPIDERVYVSVDGGMSDNIRPALYGADYT-ARLANRTGSTETMLARVCGMHCESGD 472
                  ++R ++ +D  M+D IRP++YGA +    +      T T    + G  CESGD
Sbjct: 298 -------EDRQFLILDAAMNDLIRPSMYGAYHDIVPVREAAPGTPTTPYDIVGPVCESGD 350

Query: 473 IVVHEVRLPADLKRGDILAVPVTGAYGRTMASNYN-QALIPAVVAVSEQGAHVMLRRQTI 531
                 R    L  GD++A    GAYG  MAS YN + LIP V+   +Q A V+ +R + 
Sbjct: 351 TFAKS-REMVPLTEGDLVAFRSAGAYGAVMASEYNTRPLIPEVLVHGDQFA-VIRQRPSF 408

Query: 532 DDLLDLD 538
           D++++ D
Sbjct: 409 DEIINRD 415