Pairwise Alignments

Query, 540 a.a., diaminopimelate decarboxylase from Bifidobacterium breve UCC2003

Subject, 414 a.a., diaminopimelate decarboxylase (RefSeq) from Shewanella sp. ANA-3

 Score = 93.2 bits (230), Expect = 2e-23
 Identities = 78/246 (31%), Positives = 111/246 (45%), Gaps = 25/246 (10%)

Query: 294 LELVGAHSHIGSNIHDADAFIHAAKRMMLLRKTLWATDAYILPEIDLGGGYSVAYTDGED 353
           L++ G   HIGS + +   F+ A  RM+ L   L A    ++   D+GGG  V Y D E 
Sbjct: 191 LQVKGVDCHIGSQLTEIQPFLDAMDRMLALIDRL-ADQGIVIEHFDVGGGLGVTYDD-ET 248

Query: 354 SMDIDVELTRLAGSVSDTNRALGMPAPAISFEPGRYIVAPAGVTLYRVGTIKHVHLSDAK 413
               DV    L   + D    L        FEPGR I A AG+ + +V     ++L +  
Sbjct: 249 PPHPDVYAAALLARLGDRKLKL-------IFEPGRAIAANAGIFVTQV-----LYLKENS 296

Query: 414 DSAGNPIDERVYVSVDGGMSDNIRPALYGADYTARLANRTGSTETMLARVCGMHCESGDI 473
           D          +  VDG M+D IRPALY A       N     +  +  + G  CE+GD 
Sbjct: 297 DKR--------FAIVDGAMNDLIRPALYSAWQNIIPVNPRDE-QAQVFDIVGPVCETGDF 347

Query: 474 VVHEVRLPADLKRGDILAVPVTGAYGRTMASNYNQALIPAVVAVSEQGAHVMLRRQTIDD 533
           +  +  L   +  GD+L V  +GAYG  MASNYN     A V V    A+++  R+ +  
Sbjct: 348 LGKDRALA--IAAGDLLVVRSSGAYGFAMASNYNTRPRAAEVMVDGDKAYLVREREKLAQ 405

Query: 534 LLDLDQ 539
           L   +Q
Sbjct: 406 LWQGEQ 411



 Score = 69.3 bits (168), Expect = 3e-16
 Identities = 52/169 (30%), Positives = 83/169 (49%), Gaps = 12/169 (7%)

Query: 23  GRTAESLLDEFGSPLYLIDTDEVSACAKHFVRAAAEAFNTS-ATH---VSFAGKAFLSKE 78
           G     L  ++G+PLY+      +   +H+      AFN + A H   V +A KA  +  
Sbjct: 15  GCRVNDLAQQYGTPLYIYSR---ATLERHW-----HAFNNAVADHPHLVCYAVKANSNLA 66

Query: 79  IVRLVAEAGMFVDTCTMGEMRIALAAGVPGRRLVLHGNNKSDDEIALAIEQGFAKIVVDE 138
           ++ ++A  G   D  + GE+   + AG    ++V  G  K+  E+  A+  G     V+ 
Sbjct: 67  VLNVLARLGSGFDIVSGGELARVIEAGGDPAKVVFSGVGKTVAEMEQALNLGIYCFNVES 126

Query: 139 PNEPERIAAIARKLGKRARVMLRVTVGVHAGGHEYISTAHEDQKFGVPL 187
             E E++  +A +LGK A V LRV   V AG H YIST  ++ KFG+ +
Sbjct: 127 SAELEQLNDVAGRLGKVAPVSLRVNPDVDAGTHPYISTGLKENKFGIAM 175