Pairwise Alignments

Query, 338 a.a., LacI family transcriptional regulator from Bifidobacterium breve UCC2003

Subject, 351 a.a., transcriptional regulator, LacI family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  131 bits (330), Expect = 2e-35
 Identities = 104/351 (29%), Positives = 169/351 (48%), Gaps = 24/351 (6%)

Query: 1   MTVAKRNRVTLADVAKAANVSRSTASRALNNSPRISRETTARIKKIADSMGFIPNAQGRA 60
           +T A  ++ T  D+A  A VS+ST SRAL NSP ++ ET  RI+ IA  + +  +     
Sbjct: 2   VTFAMASKATSIDIAYRAGVSQSTVSRALRNSPLVNLETRQRIQAIAKELNYKVDKNASN 61

Query: 61  LAVGRNETIAILITEPL--DELFDDPTYAMFISGITEKLSESSY--LPVLLQASTDFEHH 116
           L    + T+A+L+ E    D+   +P +   +  IT   ++  Y  L    Q S+D+   
Sbjct: 62  LRTQNSHTLALLLCEDPTNDDSLINPFFLSMLGSITRATAQQGYDLLVSFQQLSSDWH-- 119

Query: 117 RVQQHLERRSFDAVI-----DISPYANNYLLEEMYKLRIPCVMLGQMEDRSYEGIFSSIY 171
               + +    D +I     D   Y     LE++       V+ G   +        SI 
Sbjct: 120 --ADYEDSNKADGIILLGYGDYMDYEQK--LEKLLAQHTHFVIWGAEHNNKS---VLSIG 172

Query: 172 SDDTYGARIAAQAMHDAGRRHPVSILGPRSN--PASPDRLTGYRRVY---GDELPDDRVL 226
            D+  G  IA + +   GR+   + LG  S+  P   DR  G+ +     G  +  +R +
Sbjct: 173 CDNHQGGLIATEHLISLGRK-AFAFLGDASSHSPEFRDRYLGHLKALQTAGLSVVAERQI 231

Query: 227 FTGWDATAGFSAMMQLLDTHDDIDGLLAGSDRIAVGAIEAIRQRGLTVPDDIAVVGFDDH 286
                 +AG+ A M L++     D + A SD IA+GAI A++++G+ VP+ +AVVG+DD 
Sbjct: 232 SAISTESAGYDAAMALMEKGLMFDAIFAASDLIAIGAIRALKEKGILVPEQVAVVGYDDI 291

Query: 287 PIAGRCNPPLTTVQQPLREEGSTAADLAMRMIDGEAATTVIKHMTLVRRKS 337
           P+A   NPPLTT++Q  +  G    +  +++I G+A    +   TLV R S
Sbjct: 292 PVASFANPPLTTIKQNTQLAGEILVESLLKLIRGQAVGPQLIPTTLVVRSS 342