Pairwise Alignments

Query, 424 a.a., DNA polymerase IV from Bifidobacterium breve UCC2003

Subject, 357 a.a., DNA-damage-inducible protein P (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  171 bits (433), Expect = 3e-47
 Identities = 100/299 (33%), Positives = 164/299 (54%), Gaps = 7/299 (2%)

Query: 23  VLHIDMDAFYASLEVARNPGLKGKPVIIGTGP--RSVVSAASYEARRYGINSAMPAARAH 80
           ++H+DMD ++A++E+   P  +GKP+ +G     R V+S  +YEARR+G+ SAM  A A 
Sbjct: 4   IIHVDMDCYFAAVEMRDFPEYRGKPLAVGGSRERRGVISTCNYEARRFGVRSAMATAYAQ 63

Query: 81  QLCPDGVFLPVDMAYYRMMSHRIMHEVFLTITDQFEQVSVDEGYMDVSGALLEWDKPSAI 140
           +LCPD + +P  M  Y+ +S +I   +F   T+  E +S+DE Y+DVS   L     + I
Sbjct: 64  KLCPDLILVPGRMQVYKDVSSQI-RAIFSRYTELIEPLSLDEAYLDVSDCKLHKGSATLI 122

Query: 141 GAWIRQQVAERFNVTCSVGIACNKLVAKMASTNAKPNGMLLIPAARSAQFVQMMPLRGIP 200
              IR+ +     +T S G+A  K +AK+AS   KPNG  +IP  +  +F++ + LR IP
Sbjct: 123 AEAIRRDILAETGLTASAGVAPVKFLAKVASDLNKPNGQYVIPPDKVPEFIRTLSLRQIP 182

Query: 201 GIGPSLEKRLNAWGVHSVAELAQMDKAALIQATGSPAAARGLWAASHGLDSREIATTREE 260
           G+G    ++L++ G+++  ++    K  LI   G   A   L   + G+D R ++ +RE 
Sbjct: 183 GVGKVTAEKLSSLGLNTCGDVQTYPKQELITRFGKFGAV--LIERAQGIDDRGLSVSRER 240

Query: 261 KSIGSERTLTEDTRDMHIVCRLLRSACDEVARTLRR--KGLVARTLTVKLRFADLSYQT 317
           KS+G E TL +D   +    +++     E++  L R  K        VKL+F+D    T
Sbjct: 241 KSVGVETTLAQDIYTLEQCQQVMPGLIQELSTRLSRSAKDRQIHKQVVKLKFSDFKQTT 299