Pairwise Alignments

Query, 424 a.a., DNA polymerase IV from Bifidobacterium breve UCC2003

Subject, 384 a.a., DNA-directed DNA polymerase from Herbaspirillum seropedicae SmR1

 Score =  189 bits (480), Expect = 1e-52
 Identities = 132/394 (33%), Positives = 199/394 (50%), Gaps = 54/394 (13%)

Query: 23  VLHIDMDAFYASLEVARNPGLKGKPVIIGTGP----------------------RSVVSA 60
           + H+DMDAFYAS+E+ R P L+G+ V+IG G                       R VV+ 
Sbjct: 7   IAHLDMDAFYASVELLRYPDLRGQAVVIGGGSATRPVELPDGTRQYFRMRDYAGRGVVTT 66

Query: 61  ASYEARRYGINSAMPAARAHQLCPDGVFLPVDMAYYRMMSHRIMHEVFLTITDQFEQVSV 120
           ++YEAR  G+ SAM   +A QL PD + LP D   YR  S R+  E    I    E   +
Sbjct: 67  STYEARALGVFSAMGIMKAAQLAPDAILLPTDFEAYRKYS-RLFKEAVRNIAPLIEDRGI 125

Query: 121 DEGYMDVSGALLEW-DKPSAIGAWIRQQVAERFNVTCSVGIACNKLVAKMASTNAKPNGM 179
           DE Y+D+S     W D    +   I+  V    ++TCS+G+A NK++AK++S   KPNG+
Sbjct: 126 DEIYIDLSA----WSDTAPEVARQIKDAVHAATSLTCSIGVAPNKMLAKISSELDKPNGL 181

Query: 180 LLIPAARSAQFVQMMPLRGIPGIGPSLEKRLNAWGVHSVAELAQMDKAALIQATGSPAAA 239
            ++  A   + +  +P+R I GIGP   ++L+A G+ +VA+LA      L++A    + A
Sbjct: 182 TILTPADIERRIWPLPVRKINGIGPKAAEKLSALGIDTVADLAGA-APDLLRAHFGRSYA 240

Query: 240 RGLWAASHGLDSREIATTREEKSIGSERTLTEDTR---DMHIVCRLLRSACDEVARTLRR 296
             L   + G+D R + T  E KSI  E T   D     D   +  +  + C ++A  L R
Sbjct: 241 EWLGRVAQGVDDRPVQTYSEPKSISRETTFERDLHARADRAQLSEIFTALCVKLAADLDR 300

Query: 297 KGLVARTLTVKLRFADLSYQTRSFTMEQPTDTASTLYP---ECVRQLKIMLGIPANAEPT 353
           KG V RT+ +KL++AD    TR  T+  PT  A+ +     EC++++             
Sbjct: 301 KGYVGRTIGIKLKYADFRGVTRDVTLPSPTGDAAAIRQAAGECLKRV------------- 347

Query: 354 TPLPKLIRLAGMSTSSLSE-----AHATAVQPSL 382
            PL K +RL G+   +LS+     A + AVQ  L
Sbjct: 348 -PLDKKLRLLGVRVGALSKKDEQAAASHAVQAEL 380