Pairwise Alignments

Query, 266 a.a., 30S ribosomal protein S3 from Bifidobacterium breve UCC2003

Subject, 244 a.a., SSU ribosomal protein S3p (S3e) from Xanthomonas campestris pv. campestris strain 8004

 Score =  229 bits (584), Expect = 4e-65
 Identities = 122/247 (49%), Positives = 170/247 (68%), Gaps = 9/247 (3%)

Query: 1   MGQKINPFGYRLGITENHRSKWFSDSNKAGERYRDFVLEDDQIRKEMSKDLERAGVSRIV 60
           MG K++P G RLGI ++  SKW++  +KA   +  ++  D ++R+ + K L +AG+S+I+
Sbjct: 1   MGHKVHPTGIRLGIAKDWNSKWYA--SKAD--FAAYLAADLKVREMLRKKLAQAGISKIL 56

Query: 61  IERTRDRVRVDIHTARPGIVIGRRGAEAERVRAKLEKLTGKQVQLNIFEVKNAALDAQLV 120
           IER     RV IHTARPG+VIG+RG + E++R ++ ++ G    +N+ EV+   LDAQLV
Sbjct: 57  IERPAKTARVTIHTARPGVVIGKRGEDIEKLRKEVSEMMGVPAHINVTEVRKPELDAQLV 116

Query: 121 AQGIAEQLTNRVTFRRAMRKAQQDAMHAGAKGIRIKLSGRLGGAEMSRSEFYREGRVPLQ 180
           A+ IA+QL  R+ FRRAM+++  +AM  GA GI++ ++GRL GAE++RSE+YREGRVPL 
Sbjct: 117 AESIAQQLERRIMFRRAMKRSVGNAMRLGALGIKVNVAGRLNGAEIARSEWYREGRVPLH 176

Query: 181 TLRALIDYGFFEAKTTYGRIGVKVWIYKG---DMTESEFEEQQAQQNNRPGRRGDR--RP 235
           TLRA IDYGF EA TTYG IG+KVWIYKG   D ++   E+Q     N    RGDR  RP
Sbjct: 177 TLRADIDYGFAEASTTYGIIGIKVWIYKGEVFDFSQVGQEKQDDSPRNDRNDRGDRGDRP 236

Query: 236 RRGNRSA 242
            R  R A
Sbjct: 237 SRPAREA 243