Pairwise Alignments

Query, 266 a.a., 30S ribosomal protein S3 from Bifidobacterium breve UCC2003

Subject, 229 a.a., 30S ribosomal protein S3 (RefSeq) from Shewanella loihica PV-4

 Score =  234 bits (596), Expect = 2e-66
 Identities = 121/230 (52%), Positives = 166/230 (72%), Gaps = 7/230 (3%)

Query: 1   MGQKINPFGYRLGITENHRSKWFSDSNKAGERYRDFVLEDDQIRKEMSKDLERAGVSRIV 60
           MGQK++P G RLGIT+   S W++D +     Y + +  D ++RK + K L++A VS+IV
Sbjct: 1   MGQKVHPNGIRLGITKPWISTWYADKSD----YANNLSSDWEVRKFLEKKLKQASVSKIV 56

Query: 61  IERTRDRVRVDIHTARPGIVIGRRGAEAERVRAKLEKLTGKQVQLNIFEVKNAALDAQLV 120
           IER    VRV IHTARPG+VIG++G + E++R ++ KLTG   Q+NI E++   LDA+LV
Sbjct: 57  IERPAKSVRVTIHTARPGVVIGKKGEDVEKLRNEVAKLTGIPAQINIAEIRKPELDAKLV 116

Query: 121 AQGIAEQLTNRVTFRRAMRKAQQDAMHAGAKGIRIKLSGRLGGAEMSRSEFYREGRVPLQ 180
           A+GIA QL  RV FRRAM++A Q+AM  GAKGI++++SGRLGGAE++RSE+YREGRVPL 
Sbjct: 117 AEGIASQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGAEIARSEWYREGRVPLH 176

Query: 181 TLRALIDYGFFEAKTTYGRIGVKVWIYKGDMTES---EFEEQQAQQNNRP 227
           TLRA IDY   E+ T YG IGVKVW++KG++ +      EE + Q   +P
Sbjct: 177 TLRADIDYSTAESHTQYGVIGVKVWVFKGEVLDGVVPALEEPKQQPKRKP 226