Pairwise Alignments

Query, 499 a.a., DNA repair protein RadA from Bifidobacterium breve UCC2003

Subject, 458 a.a., DNA repair protein RadA from Vibrio cholerae E7946 ATCC 55056

 Score =  328 bits (840), Expect = 3e-94
 Identities = 178/495 (35%), Positives = 277/495 (55%), Gaps = 42/495 (8%)

Query: 1   MAKSSVQYVCSECGWNGPKWYGRCPECGQWGTVEEFHEARPAAGSHTAAPGRTSRTRSAA 60
           M K+   YVC+ECG + P+W G+C  CG W ++ E   A        A+P      R   
Sbjct: 1   MVKAKRAYVCNECGADFPRWQGQCNACGSWNSISEVRLA--------ASPQVARNERLVG 52

Query: 61  VPDTARAAAKPITEIGTETVERLGTGFSEFDRVLGGGVVPGSVTLIAGEPGIGKSTLLLQ 120
                 A  + + +I  + V R  +GF E DRVLGGG+VPG+  LI G PG GKSTLLLQ
Sbjct: 53  YAGALEAKVQTLADIDLQEVPRFTSGFKELDRVLGGGIVPGAAILIGGNPGAGKSTLLLQ 112

Query: 121 TAGNIARTVAEGQTINAAGRGQSSHRPSGLASTRAHTVLYISGEESQAQVRLRATRINAV 180
           T       +  GQ                         LY++GEES  QV +RA+R+   
Sbjct: 113 T-----MCLLSGQM----------------------PTLYVTGEESLQQVAMRASRLGLP 145

Query: 181 EPNLLLAATTDLATVLGLIEQNKPALAIVDSAQTIVSQEVDGISGGSTQVREVASALIDT 240
           + +L + + T++  +  + EQ KP + ++DS Q +   +V    G   QVRE A+AL   
Sbjct: 146 KQHLKMLSETNVDRICQIAEQEKPRIMVIDSIQVMHVADVQSSPGSVAQVRESATALTRY 205

Query: 241 AKTLDIPVFLVGHVTKDGSIAGPRTLEHLVDVVCQFEGDSETALRMLRAAKNRFGPTDEV 300
           AK  ++ VF+VGHVTKDG++AGP+ LEH++D     +GD+++  R LR+ KNRFG  +E+
Sbjct: 206 AKQNNVAVFIVGHVTKDGTLAGPKVLEHIIDCSILLDGDTDSRFRTLRSHKNRFGAVNEL 265

Query: 301 GCFDMSGEGIEEVTDPAGLFLSGDGPESANDAPVEGTCVTFTLDGHRSLPIEVQALVTNS 360
           G F M+G+G+ EV++P+ +FL      S  +    G+ V    +G R L +E+QALV  S
Sbjct: 266 GVFAMTGQGMREVSNPSAIFL------SRGEEATSGSSVMVVWEGTRPLLVEIQALVDYS 319

Query: 361 VLPTPRRAVNGVDPSRIAMLVAVLYRHSKLNLLSNDLYISTIAGGQAKEPGSDLAIVGAL 420
            L  PRR   G++ +R+++L+AVL++H  L +   D++++ + G +  E  +DLA++ AL
Sbjct: 320 QLANPRRVAVGLEQNRLSLLLAVLHKHGGLQMADQDVFVNVVGGVKVTETSADLALLMAL 379

Query: 421 ASAATSKPIARSTCAIGEISLTGQVRPVPRMEYRLREAARLGFTTAVIPPLRKPV-HVDG 479
            S+   +P+ +     GE+ L G++RPVP  + RL EA + GF  A++P    P   ++G
Sbjct: 380 LSSFRDRPLPKDVVVFGEVGLAGEIRPVPSGQERLNEAFKHGFKKAIVPIANMPKGGIEG 439

Query: 480 LKLVEASTLADALHA 494
           +++     L+DA+ A
Sbjct: 440 MQIHGVKKLSDAIAA 454