Pairwise Alignments

Query, 227 a.a., DNA-binding response regulator from Bifidobacterium breve UCC2003

Subject, 229 a.a., response regulator (RefSeq) from Shewanella loihica PV-4

 Score = 98.6 bits (244), Expect = 9e-26
 Identities = 68/216 (31%), Positives = 105/216 (48%), Gaps = 17/216 (7%)

Query: 9   IRVAVVDDHEMFRAGVIATLRDS--FDIVGQAADVPGSVAMIAQTKPQVVLLDVHVPGGE 66
           I V +VDDHE+ R G+   L D     +VG+A D   +V      +  V+L+D+++PG  
Sbjct: 17  ISVFLVDDHELVRTGIRRILEDERGIKVVGEAGDGESAVQWCRNNEADVILMDMNMPGI- 75

Query: 67  GGGGAEILTKSRAYSPATVFLALSVSDAPQDVGSVIRAGAQGYVTKTITGADLISSIKQV 126
             GG E   K   Y      + L++         V++AGA GY+TK  T  ++I +I+QV
Sbjct: 76  --GGLEATRKILRYQSHAKIIVLTIHTEDPFPTKVMQAGASGYLTKGATPPEVIQAIRQV 133

Query: 127 HEGYAVFSPKLA-GFVLSAFQGVPAAGADGAAPAHDEELDRLSAREQEVMRLIARGYTYK 185
             G    SP++A    LS F             + D     LS RE ++M +I  G    
Sbjct: 134 AHGQRYLSPEIAQQMALSQFN-----------QSEDNPFKSLSERELQIMMMITNGERVS 182

Query: 186 EVAAELFISIKTVETHVSSVLRKLQLSNRTELTRWA 221
           +++ +L +S KTV ++   +  KL +S   ELTR A
Sbjct: 183 DISEQLNLSPKTVNSYRYRLFAKLGISGDVELTRLA 218