Pairwise Alignments

Query, 227 a.a., DNA-binding response regulator from Bifidobacterium breve UCC2003

Subject, 209 a.a., two component LuxR family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  103 bits (257), Expect = 2e-27
 Identities = 68/211 (32%), Positives = 113/211 (53%), Gaps = 19/211 (9%)

Query: 11  VAVVDDHEMFRAGV--IATLRDSFDIVGQAADVPGSVAMIAQTKPQVVLLDVHVPGGEGG 68
           V VVDDH + R G+  + T    F + G+A     +++ IA+ +P +VLLD+++   +G 
Sbjct: 7   VLVVDDHPLLRRGICQLITSDSDFTLFGEAGSGLDALSAIAENEPDIVLLDLNM---KGM 63

Query: 69  GGAEILTKSRAYSPATVFLALSVSDAPQDVGSVIRAGAQGYVTKTITGADLISSIKQVHE 128
            G + L   R     +  + L+VSDA QDV  ++RAGA GY+ K      L+  +K   +
Sbjct: 64  TGLDTLNALRQEGVTSRIVILTVSDAKQDVIRLVRAGADGYLLKDTEPDLLLEKLKNAMQ 123

Query: 129 GYAVFSPKLAGFVLSAFQGVPAAGADGAAPAHDEE--LDRLSAREQEVMRLIARGYTYKE 186
           G+ V S  +  F+            DGA    DE+  +D L+ RE +++  +A G + + 
Sbjct: 124 GHRVISESVEDFIYEL--------KDGA----DEQAWIDNLTPRELQILEQLAEGKSNRV 171

Query: 187 VAAELFISIKTVETHVSSVLRKLQLSNRTEL 217
           ++ +L IS  TV+ HV ++LRK    +RTE+
Sbjct: 172 ISEQLHISEGTVKVHVKNLLRKANAKSRTEM 202