Pairwise Alignments

Query, 455 a.a., exodeoxyribonuclease VII large subunit from Bifidobacterium breve UCC2003

Subject, 445 a.a., exodeoxyribonuclease VII, large subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  155 bits (392), Expect = 3e-42
 Identities = 112/415 (26%), Positives = 189/415 (45%), Gaps = 47/415 (11%)

Query: 82  WVTGQITQINTRRAGSAYITLRDDFEDIAMEVNGFGRFADTARQFIQGDRVVIHGKPNLW 141
           W+ G+I+  +T  +G  Y+TL+D F  I   +   GR    + + + G +V++ G  +++
Sbjct: 30  WLNGEISNFSTPSSGHWYLTLKDHFSQIRCAMFK-GRNQSVSFKPVNGQQVIVKGAISVY 88

Query: 142 MKRTSLSLRGDTILKVGAGGSLKAMIDELRKRLKGEGLFDADHKLPLPEFPKTIGLICAP 201
             R    L  +++L  G  G L    + L+ +L   GLF AD K  LP+  + IG+I +P
Sbjct: 89  EPRGDYQLLIESMLPAG-DGLLAQQFEALKMKLAALGLFAADTKRALPKNIQRIGVITSP 147

Query: 202 QARAEGDVITNVNLRWPSVTFKVVHVHVQGEQCPGEVAQAIARLDTDPDVDVIIVARGGG 261
              A  DV+  +  R PS+   +    VQGE     + QAI   +   +VDV+++ RGGG
Sbjct: 148 TGAAIRDVLHVLARRDPSIEVIIYPTQVQGENADINICQAINIANQRLEVDVLLLTRGGG 207

Query: 262 SFEDLMGFSDERVVRAAYACTTPLISSIGHEDDWTLLDLVADLRASTPTDAAKRVVPDVN 321
           S EDL  F+ E +    Y    P++S++GHE D T+ D VAD+RA TP+  A+ +  D +
Sbjct: 208 SLEDLWCFNSEALAHTIYNSALPIVSAVGHEVDTTISDYVADVRAPTPSAGAELLSQDSD 267

Query: 322 EQTQLITGAIDRMRLRIRSRVDNEDRLIEGYANRPSLTQPLTMLEPHQRLIDDSIQRLDI 381
            ++Q +   + R++         ++R +    +R     P   L+  ++  D+   RL+ 
Sbjct: 268 NKSQRLATVLARLKQSASHYQLKQERRLSLLEHRLQRLDPKRTLQQFEQRFDEMQLRLEA 327

Query: 382 GL--------------------------------------RRIVDDAQ-------LTVEK 396
            L                                       R+ D  Q         ++ 
Sbjct: 328 ALTNKLHGLSRRQQQLASRLEQQSPKHKLALEANRLSYLATRLQDAMQDKLSHSGQRIKY 387

Query: 397 AHASLTALSPQSTLNRGYAVVQSADGTVLDDASTAHIGDDITVTLKKGVITATTT 451
               L  +SP +TL+RGY++    +G V+  AS   +GD IT  L    + +T T
Sbjct: 388 VAHQLETVSPLATLSRGYSITTDVNGAVITSASQISLGDTITTQLSNERLMSTVT 442