Pairwise Alignments

Query, 238 a.a., ribulose-phosphate 3-epimerase from Bifidobacterium breve UCC2003

Subject, 225 a.a., ribulose-phosphate 3-epimerase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  105 bits (263), Expect = 6e-28
 Identities = 63/208 (30%), Positives = 107/208 (51%), Gaps = 4/208 (1%)

Query: 3   RKIQLSPSLMTMDLDQFKEQITFLNDK-VNSFHIDVMDGHFVPNITLSPWFVEQVRKIS- 60
           R   ++PS+++ D  +  + +  + D   +  H DVMD H+VPN+T+ P   + +R    
Sbjct: 2   RPFLIAPSILSADFARLGDDVKAVLDAGADVVHFDVMDNHYVPNLTIGPMVCKALRDYGI 61

Query: 61  DVPMSAHMMVMDAPFWVERLIEVKCDYICFPSEVANGVAFSIIDKIHAAGLKAGAVLNPE 120
              +  H+MV      V    +     I F  E +  +  ++   I  +G KAG V NP 
Sbjct: 62  TADIDVHLMVKPVDRIVPDFAKAGASIITFHPEASEHIDRTL-QLIKESGCKAGLVFNPA 120

Query: 121 TSIDVIKPYIDLLDKITIMTIDPGFAGQRFLESTLDKIVELRALREEMGYNYEIEMDGST 180
           T +  +   +D LD I +M+++PGF GQ F+ STLDK+ ++R   +  G++  +E+DG  
Sbjct: 121 TPLHYLDHVMDKLDVILLMSVNPGFGGQSFIPSTLDKLRQVRERIDASGFDIRLEVDGGV 180

Query: 181 NKAHWKMISDANPDVYVIGRSGLFGLTD 208
              +   I+ A  D++V G S +FG  D
Sbjct: 181 KVDNIAEIAAAGADMFVAG-SAIFGKPD 207