Pairwise Alignments

Query, 481 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Bifidobacterium breve UCC2003

Subject, 460 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  225 bits (573), Expect = 3e-63
 Identities = 168/482 (34%), Positives = 257/482 (53%), Gaps = 38/482 (7%)

Query: 1   MVPMSVEEIAKAVDGRLVAGDGSAIEATETVTDSRQAGSGAVFVAIKGERVDGHDFVDKV 60
           M+P+S++ +++ +    V GD   ++A  +  DSR+ G   +FVA+KG+R DGHDF    
Sbjct: 1   MIPISLKALSQHLGAHRV-GDDVTVQALSS--DSRKIGPATLFVALKGDRFDGHDFAATA 57

Query: 61  ADQGAAAAIVDHEVACTTMPQIVVEDTVAALGLLAKHNIDRRRQLPGAFDLIGLTGSVGK 120
            + GA A +V+ E+A   +PQ++V D   A+G +  +  D+   +      + LTGS GK
Sbjct: 58  IENGAIALLVERELAFD-IPQLIVADCQKAMGAIGAYVRDQVNPI-----CVALTGSNGK 111

Query: 121 TTTKDLLSALLSTLGPTVAPIGSFNNEIGLPLTALRVNADTRFFVAEMGANHIGEIARLT 180
           T+ K++++ +LS     +   G+FNNEIG+PLT LR+  + ++ V E+GANH GEI   +
Sbjct: 112 TSVKEMIATILSAKHQVLYTAGNFNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTS 171

Query: 181 RIAPPNTVIVLRVGVAHLGEFGSRERIAQAKSEIVQGLLPGGTAVLNADDDYVVPMAQLA 240
            +  P+  +V  VG AHL  FGS+  +AQAKSEI   L   GTA++NADD +   M   A
Sbjct: 172 GLVRPHVALVNNVGSAHLEGFGSQAGVAQAKSEIYNHLQEDGTAIINADDAFADVMRVKA 231

Query: 241 SG-DVLWFGQ---GHTHDSEVHADHIAADAADHAEFTMTDAHGEQVAVHLGIPGRHNVMN 296
                L F Q         +V A    A++     F +  A GE   V L + GRH V N
Sbjct: 232 KHYKQLSFSQQEGAAKRQIDVIATGHKANSDGCYRFMLNYA-GESCEVVLPLAGRHQVSN 290

Query: 297 ALAAATVALRYGMPLTAIAQTLAAQHTISPHRMALSTVSRQGASFELIDDSFNANPDSMK 356
           ALAAA+V +  G+ LT IA+ L +Q T    RM  + + R      LIDDS+NANP S+ 
Sbjct: 291 ALAAASVCIALGLNLTEIAEGL-SQLTPVKGRMQPTQLGR----VRLIDDSYNANPVSVG 345

Query: 357 AGLDGLRAWNANDGRQPFRVALLGAMLELGADERELHASVGEYAAGLGLDAIITVGSPSD 416
           A +  L+  + N      R  +LG + ELG +   LHA +G+ A   G+DA+   G+ + 
Sbjct: 346 AAIAWLKEISEN------RCLVLGDLGELGDNAPLLHAELGQLARQQGIDALFCTGTLTQ 399

Query: 417 AHLNVLAESLAEGATRGRAASVDCVQTIDEAERIVLDLAKNHTDTVVLLKGSHASGLSAL 476
                   S A GA        D V T+   E+++  + +      VL+KGS ++ +  +
Sbjct: 400 ------HTSHAFGAEHH-----DSVATL--VEKLIKHINQLPGQVTVLVKGSRSAAMERV 446

Query: 477 AE 478
            +
Sbjct: 447 VD 448