Pairwise Alignments

Query, 1215 a.a., chromosome segregation protein SMC from Bifidobacterium breve UCC2003

Subject, 1145 a.a., SMC family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  376 bits (965), Expect = e-108
 Identities = 343/1262 (27%), Positives = 564/1262 (44%), Gaps = 171/1262 (13%)

Query: 1    MYLKELTLRGFKSFASATTLRFEPGITAVVGPNGSGKSNIVDALTWVMGEQGAKNLRGTS 60
            M LK++ L GFKSF   T + F   ++A++GPNG GKSN++DA+ WV+GE  AK+LRG S
Sbjct: 1    MRLKQIKLAGFKSFVDPTKIPFLQALSAIIGPNGCGKSNVIDAVRWVLGESSAKHLRGDS 60

Query: 61   MEDVIFAGTSSRPPLGRAQVSLTIDNSDHTLD---IDYTEVTISRTIFRNGGSEYAINGS 117
            M DVIF G+S+R P+  A V L  +N +  L      Y E+++ R + R+G S Y +NG 
Sbjct: 61   MSDVIFNGSSARKPVSVAGVELVFENKEGRLAGQYASYEEISVKRQVSRDGESWYFLNGQ 120

Query: 118  QCRLLDIQELLSDTGLGQQMHVIVGQGRLDAILKADPSGHRAFIEEAAGILKHRKRKERA 177
            +CR  DI +L   TGLG + + I+ QG +  ++++ P   R FIEEAAGI ++++R+   
Sbjct: 121  KCRRKDITDLFMGTGLGPRSYAIIEQGTISRLIESKPQDLRTFIEEAAGISRYKERRRET 180

Query: 178  LRKLANTESNLNRLDDLLREIHRQLGPLGRQARISRRADAIQVSVRDAQARIYAEDAQRS 237
              ++ +T  NL RL D+  E+ +QL  L +QA+ + +   ++ + R   A +     Q  
Sbjct: 181  ESRIRHTRENLERLGDIRSELGKQLDKLSQQAKAATQYRELKQAERKTHAELLVMRFQEL 240

Query: 238  MARRETVRKELGDVRSQLSVAQRELAQVKVRIEQVEALSSESSPAIAKTNQYWHEFSQIR 297
             ++  ++ +++  +  Q + AQ                      ++A+T++      Q++
Sbjct: 241  QSQMASLSEQINSLELQQAAAQ----------------------SLAQTSELESTELQVK 278

Query: 298  ERLHALAQLAEERGHSLTGQIVSNFGEDPDMLLKRAKELETQAAAQTKAVADARIALDKA 357
                 L+QLAE+  H++    ++              +LE Q  +Q +  A     L++ 
Sbjct: 279  -----LSQLAEQEQHAVEAYYLTG---------TEIAKLEQQLQSQKQRDAQLHTQLEQL 324

Query: 358  TEERADDEKKL----ASIRQTLTELRKTAQERDAHIASLREL-------IAREESAVQLA 406
            +E+   ++ KL    AS      EL + A + +     + EL       ++R E+  ++A
Sbjct: 325  SEQLTQNKAKLDTYQASFHALEAELGQLAPQHELQQEMMDELQAQWEMSVSRSEAQTEVA 384

Query: 407  DSRAK---DHTGQ----RETLAKQHDDAQHQLESLRSEAQSVADDDGAALDKARAALAER 459
             ++A     H  Q    R  L  Q     H+ +  + + Q ++     AL+   A+L++ 
Sbjct: 385  RTQASAVAQHKLQLELHRSKLVHQQQLNAHKTQLHQEQQQELSSLTEHALEDTSASLSQE 444

Query: 460  RDVLNELTDRQRDVQSKI-ISL----------QAKADALSDTLDSRNASGS-----LERD 503
             ++L ++  +Q +V  ++ ++L          + + + LS  L S  A        L + 
Sbjct: 445  IELLEQVITQQIEVNQELELALVENTQALDLARGEFEQLSQRLTSMRARFELVEQWLAKQ 504

Query: 504  EQVASLGRLTDFIHVADGWEEAVAHALDQYASAIVVPETGNML------HALERAREDKL 557
            E+++   +L   I V +GWE A   AL Q    + V  + N L        LE+  +   
Sbjct: 505  EELSDKPQLWQSIQVENGWEAAAELAL-QGLMTLPVGVSANELGFYTDARCLEKIDDHIE 563

Query: 558  GKAVVLTVMPADEPFAALADTDICLANLVTANPEASDKTQAAACVRTVQLLLADVAAAET 617
            G  + L   PAD   A   +      NL +A                 Q  LA +AA E 
Sbjct: 564  GSPIKL---PADVNLAPWLNGLKWADNLASA-----------------QAQLASLAADE- 602

Query: 618  ADEAQRLVASGKAPRAVTKHGETFAHGVAAVGGSSISQSDLSLAARRDKALAQVKQLGVE 677
                          R VT  G     G               L A++D + + V QL  E
Sbjct: 603  --------------RIVTADGYLLGKGF--------------LIAKQDNSQSLV-QLSKE 633

Query: 678  ANELAEQVSEAKSKRDEAARLVDQESAKRTEVRLKAQQAEKSLKSAEDRVASFARQLEQL 737
              +L+E ++E    R      +D+ S +  +VR    Q  + L               QL
Sbjct: 634  QTQLSEAIAECVQARAIQQSKLDELSQQLIQVRDSVNQGTQRLHQL------------QL 681

Query: 738  DKKIADTQENRNEHQLKLDDLNRA-LESAQQSTDEHADFDELDERERTLERDLNLTREHE 796
            DK    TQ N  E   K  +  R  LE     T  HA+  EL  +   L       +E E
Sbjct: 682  DKATKSTQLNNAEALAKQREAKRGQLEDTVART--HAELAELAGQLMLLAE-----QEDE 734

Query: 797  VAAKIAWTEASRKGESLTRQAGLLRDNAKEA--VERRARIESLNERRRDQAAHLQGVADD 854
            +A  +A +   ++ +S   Q  L R  A +A   + + R+ +LN   +     +    + 
Sbjct: 735  LADALAQSIDKQQQQSQDAQGDLARHQALKAQISDTQRRLSTLNASLQSVTTRMAVSTEQ 794

Query: 855  AREVAAMVERTLQGVAAERDKLQEAASSHDDELKTLRAQRNEIEPKVTDLTGREHALDVN 914
                   V   +Q       +L   A  H D+      Q  ++  ++  L  ++ +    
Sbjct: 795  IELQRVRVNELVQSRETLSAQLASVAELHGDQ------QTAKLSEQLALLLNQQQSQQQA 848

Query: 915  RERLAAEAGQLMQKVSDELGL-TLEELVREYGPDQPVPVLDDDGNPVPLEHMDGEGDGNA 973
             + L  +   L + + + +GL   +EL +  G  Q +  L      +  E + G+ D   
Sbjct: 849  LKALRTQQSSLTETL-NSIGLKQKQELGKLEGLTQSLSTL-----KLRREGLKGQADSQL 902

Query: 974  DDAATDAPDAAANSVTDPSRFQTVPYNRQEQQKRLDKARRDLAALGKINPLATEEFEALE 1033
              AA          + D       P    + Q+ LD+ R+ +  LG IN  A EEFE   
Sbjct: 903  --AALSEQQIVLAQIIDSLPSDGQP---DKWQRDLDQIRQKIIRLGAINLAAIEEFEQQS 957

Query: 1034 ERNKYLNDQRNDVVKSRDDLMQLIKDLDSTMVEVFKSAFDDTAEAFEKMFATLFPGGTGR 1093
            ER  YL+ Q  D+ K    L + I+ +D      FK+ FD   E   ++F  +F GG   
Sbjct: 958  ERKSYLDHQDEDLNKGLATLEEAIRKIDKETRTRFKATFDAVNEDLGRLFPKVFGGGRAY 1017

Query: 1094 LRLENPEDLLTTGVLVEASPAGKRVKQLSLLSGGERSLTALALLFAIFTARPSPFYVMDE 1153
            L L   +DLL TGV + A P GK+   + LLSGGE++LTAL+L+FAIF   P+PF ++DE
Sbjct: 1018 LAL-TEDDLLETGVTIMAQPPGKKNSTIHLLSGGEKALTALSLVFAIFRLNPAPFCMLDE 1076

Query: 1154 VEAALDDVNLTRLIDAFNELRAHAQLIIITHQQRTMSIADALYGVTMRADGVTAVVSQKL 1213
            V+A LDD N+ R      E+    Q I I+H + TM +AD L GVTM   GV+ +V+  L
Sbjct: 1077 VDAPLDDANVERFCRLLKEMSQSVQFIYISHNKITMEMADQLIGVTMHEPGVSRIVAVDL 1136

Query: 1214 DK 1215
            ++
Sbjct: 1137 EQ 1138