Pairwise Alignments

Query, 309 a.a., site-specific tyrosine recombinase XerD from Bifidobacterium breve UCC2003

Subject, 303 a.a., tyrosine recombinase XerD (RefSeq) from Shewanella loihica PV-4

 Score =  225 bits (573), Expect = 1e-63
 Identities = 129/299 (43%), Positives = 179/299 (59%), Gaps = 9/299 (3%)

Query: 9   LREQFLVHIGIERGLAKATVSAYESDLNKYVAWLQTHGITKPDDIAKQDVEDYIAALDAD 68
           L E FL  +   +GL+  T+ AY SDL+ +  +L   G +     ++ +V DY+A     
Sbjct: 13  LIEPFLDDLWAAKGLSDHTLQAYRSDLSHFDRYLNKQGSSLLST-SQAEVRDYLALRVEH 71

Query: 69  GESARSKARRLASIHEFHRFALAQHAVLADVAASVKAPKGASVLPDVLSVDEVSRLLDAA 128
           G +  S AR L+S+  F+++ LA+  +  D  A +K PK A  LPD LS  +V RLL   
Sbjct: 72  GFAKTSSARLLSSLRRFYKYLLAKKLIEVDPMAMIKPPKLARKLPDALSEADVDRLLSEP 131

Query: 129 AVGGSTDPVVLRDKALLEFMYATGCRVSEAVGTNLDDIDLEEKVVRLMGKGSKQRLVPLG 188
                 DPV  RD+A+LE +YA+G RVSE VG  LD + L + VVR++GKGSK+RLVP G
Sbjct: 132 ---NREDPVEARDRAMLELLYASGLRVSELVGLTLDQMSLRQGVVRIVGKGSKERLVPFG 188

Query: 189 SYARNSVVAYLNAGRGELERRSTAKVPERRALFLNKRGKRISRQSVWEIVKTAGERAGIT 248
             A   +  YL A R EL +   + V     +F +KRG  ++RQ+ W  +K   +RAGI 
Sbjct: 189 EQAGAEIEDYLKAARFELLKGKASDV-----VFPSKRGNMMTRQTFWHRIKLYAQRAGIA 243

Query: 249 KPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEALIETYLTAHPR 307
             L PHTLRH+FATHL+  GAD+R VQ LLGH+ ++TTQIYTHV+   L + +   HPR
Sbjct: 244 VHLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVAKARLAQLHQAHHPR 302