Pairwise Alignments

Query, 309 a.a., site-specific tyrosine recombinase XerD from Bifidobacterium breve UCC2003

Subject, 294 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  210 bits (535), Expect = 3e-59
 Identities = 123/299 (41%), Positives = 181/299 (60%), Gaps = 11/299 (3%)

Query: 11  EQFLVHIGIERGLAKATVSAYESDLNKYVAWLQTHGITKPDDIAKQDVEDYIAALDADGE 70
           +++L H+ +ERGLA+ T++AY +DL +   +L+  G    + + +Q +  ++  L   G 
Sbjct: 2   DRWLEHLLVERGLAENTLAAYSADLIELQVFLEERGCLLAE-VDEQTLFMHVVDLRRRGM 60

Query: 71  SARSKARRLASIHEFHRFALAQHAVLADVAASVKAPKGASVLPDVLSVDEVSRLLDAAAV 130
           + R+ AR LA++  F  FA+ +  + AD A  ++ PK A  LPDVL+ DE++ +L   A 
Sbjct: 61  AGRTLARHLATLRGFFAFAVGEGELEADPALFLENPKLARNLPDVLTRDEMATIL---AR 117

Query: 131 GGSTDPVVLRDKALLEFMYATGCRVSEAVGTNLDDIDLEEKVVRLMGKGSKQRLVPLGSY 190
              +D +  RD+ +LE MYA G RVSE       D D +  VVR+ GKG+K+R+VP+   
Sbjct: 118 PDLSDRLGFRDRTMLELMYAAGLRVSELCALRPLDFDAQAGVVRVFGKGAKERIVPVHHV 177

Query: 191 ARNSVVAYLNAGRGELERRSTAKVPERRALFLNKRGKRISRQSVWEIVKTAGERAGITKP 250
           +   V AYL   R        A  P   A+FLN+ GK +SRQ+VW++VK     AGI K 
Sbjct: 178 SCALVTAYLRDWR-------PAFSPVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIHKD 230

Query: 251 LHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPEALIETYLTAHPRAR 309
           + PHT RHSFATHL++GGAD+R+VQ LLGHA ++ T+IYTHV  + L   +   HPR R
Sbjct: 231 ISPHTFRHSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNAHHPRTR 289