Pairwise Alignments

Query, 783 a.a., type IIA DNA topoisomerase subunit B from Bifidobacterium breve UCC2003

Subject, 827 a.a., DNA gyrase subunit B from Azospirillum brasilense Sp245

 Score =  249 bits (637), Expect = 3e-70
 Identities = 148/369 (40%), Positives = 220/369 (59%), Gaps = 31/369 (8%)

Query: 323 PRTVEFLHTGGVKDFVDFLSKGE-PISDIWRIQGEGTYKEETQAVGEGGELHAQEIERTC 381
           P+  +  + GG++ FV++L + + P+           +K       E    H   +   C
Sbjct: 233 PKVQDLHYEGGLEAFVNWLDRSKVPL-----------HKPAISIKAERPTEHGGVVTVEC 281

Query: 382 GVDIALRWVNGYDTTIMSFVNIVETPGGGMHVDGFMNAITKQIRKAVEDN--ARKLKVNL 439
               +L+W + Y  T + F N +    GG H+ GF  A+T+ I     ++  A+K KVNL
Sbjct: 282 ----SLQWNDSYHETTLCFTNNIPQKDGGTHLAGFRAALTRAINNYANESGIAKKEKVNL 337

Query: 440 KDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGEMITG 499
                    DD + GL  V++ +V +P+F  QTKD L +++V+P+V  +     GE +  
Sbjct: 338 SG-------DDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVEAVV----GECLAQ 386

Query: 500 SKRGYKEQSARVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGNDDVAE 559
               +   + RV++K+V    AR  +RKA+E+TRRK AL+ AS+P KL+DCQ  +  ++E
Sbjct: 387 YFEEHPADAKRVVQKVVEAAAAREAARKARELTRRKGALDIASLPGKLADCQERDPALSE 446

Query: 560 LFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAGSG 619
           LFIVEGDSA G+AK  R+  FQA+LP+RGKILNV++A   +MLS+ E   +I  +G G G
Sbjct: 447 LFIVEGDSAGGSAKQGRSRQFQAILPLRGKILNVERARFDKMLSSAEIGTLIAALGTGIG 506

Query: 620 Q-SFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIAL 678
           +  F+ +++RYHKII+MTDADVDG+HIR LLLT F+R M  LIE GY+Y A PPL+RI  
Sbjct: 507 RDEFNPDKTRYHKIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYLYIAQPPLYRIK- 565

Query: 679 TGSHKGEYI 687
            G+ K  Y+
Sbjct: 566 RGNAKERYL 574



 Score =  186 bits (471), Expect = 6e-51
 Identities = 102/234 (43%), Positives = 141/234 (60%), Gaps = 17/234 (7%)

Query: 1   MPKEEYGAKDLSVLEGLDAVRKRPGMYIGTTDS-QGLMHCLWEIIDNSVDEALAGFCNNI 59
           +P+++YGA+ ++VL GLDAVRKRPGMYIG TD   GL H ++E++DN++DEALAG+C+ +
Sbjct: 10  LPQQDYGAESITVLRGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGYCDAV 69

Query: 60  VVTLHTDGSVEVADNGRGIPVDKEPKTGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVG 119
           VV L+ DGSV V DNGRGIP D   + G+S  EVV+T+LHAG KF  +SY   GGLHGVG
Sbjct: 70  VVQLNADGSVTVRDNGRGIPTDIHSEEGVSAAEVVMTQLHAGGKFNQNSYKVSGGLHGVG 129

Query: 120 SSVVNALSSRLDVEVDRDGKTHHMAFHQGHPGVYADADPVNPSPDSPFKRTRKNKPTELE 179
            SVVNALS  L++ + R+G+   M F  G            P  D         KP    
Sbjct: 130 VSVVNALSETLELRIWRNGREWFMRFRHGVADERLADIGAAPMVDD---GNGGQKP---- 182

Query: 180 IIGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIVD 233
                    +GT + +    + F  T EF +  L  R+R+ +FL  G+++ + D
Sbjct: 183 --------LSGTEVTFLPSKDTFTNT-EFDFATLEHRLRELAFLNSGVRLVLTD 227



 Score = 75.1 bits (183), Expect = 1e-17
 Identities = 35/61 (57%), Positives = 47/61 (77%)

Query: 713 IQRYKGLGEMDADQLADTTMDPRTRMLRRIRMEDAAQASEIFNLLMGDEVPPRKQFIVDN 772
           IQRYKGLGEM+ DQL +TT+DP  R L ++++  A QA E+F+ LMGD V PR++FI +N
Sbjct: 759 IQRYKGLGEMNPDQLWETTLDPTKRSLLQVKVNHADQAEEVFSTLMGDIVEPRREFIQEN 818

Query: 773 A 773
           A
Sbjct: 819 A 819