Pairwise Alignments

Query, 783 a.a., type IIA DNA topoisomerase subunit B from Bifidobacterium breve UCC2003

Subject, 805 a.a., DNA gyrase subunit B from Vibrio cholerae E7946 ATCC 55056

 Score =  239 bits (611), Expect = 3e-67
 Identities = 128/303 (42%), Positives = 189/303 (62%), Gaps = 10/303 (3%)

Query: 375 QEIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGMHVDGFMNAITKQIRKAVEDNARK 434
           QE E    V++A++W +G+   I  F N +    GG H+ GF  A+T+ +   ++     
Sbjct: 245 QEREDGISVEVAMQWNDGFQENIYCFTNNIPQRDGGTHLAGFRGALTRTLNNYMDKEGFS 304

Query: 435 LKVNLKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFG 494
            K     S      DD + GL AVV+ +V +P+F  QTKD L +++VK  V    +++  
Sbjct: 305 KKAQAATSG-----DDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVKSAVESAMNEKLA 359

Query: 495 EMITGSKRGYKEQSARVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGN 554
           + +  +      ++  V  KI+    AR  +RKA+E+TRRK AL+ A +P KL+DCQ  +
Sbjct: 360 DFLAENP----SEAKNVCSKIIDAARAREAARKAREMTRRKGALDLAGLPGKLADCQEKD 415

Query: 555 DDVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVV 614
             ++EL+IVEGDSA G+AK  RN   QA+LP++GKILNV+KA   +MLS++E A +I  +
Sbjct: 416 PALSELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITAL 475

Query: 615 GAGSGQ-SFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPL 673
           G G G+  ++ ++ RYH II+MTDADVDG+HIR LLLT FYR M  LIE GY+Y A PPL
Sbjct: 476 GCGIGRDEYNPDKLRYHNIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGYIYIAQPPL 535

Query: 674 HRI 676
           +++
Sbjct: 536 YKV 538



 Score =  194 bits (494), Expect = 1e-53
 Identities = 103/230 (44%), Positives = 140/230 (60%), Gaps = 28/230 (12%)

Query: 6   YGAKDLSVLEGLDAVRKRPGMYIGTTDS-QGLMHCLWEIIDNSVDEALAGFCNNIVVTLH 64
           Y +  + VL+GLDAVRKRPGMYIG TD   GL H ++E++DNS+DEALAG+C +IVVT+H
Sbjct: 5   YDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCKDIVVTIH 64

Query: 65  TDGSVEVADNGRGIPVDKEPKTGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGSSVVN 124
            D SV V+D+GRGIP +  P+  +S  EV++T LHAG KF ++SY   GGLHGVG SVVN
Sbjct: 65  EDNSVSVSDDGRGIPTEMHPEEKVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVN 124

Query: 125 ALSSRLDVEVDRDGKTHHMAFHQGHPGVYADADPVNPSPDSPFKRTRKNKPTELEIIGKV 184
           ALS ++ + + R GK H   +H G P                           L ++G+ 
Sbjct: 125 ALSEKVLLTIYRGGKIHSQTYHHGVP------------------------QAPLAVVGET 160

Query: 185 SPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIVDE 234
             + TGT +R+W   + F    EF Y+ L  R+R+ SFL  G+ I + DE
Sbjct: 161 --ERTGTTVRFWPSAQTFT-NIEFHYDILAKRLRELSFLNSGVSIKLTDE 207



 Score = 79.0 bits (193), Expect = 1e-18
 Identities = 37/61 (60%), Positives = 46/61 (75%)

Query: 713 IQRYKGLGEMDADQLADTTMDPRTRMLRRIRMEDAAQASEIFNLLMGDEVPPRKQFIVDN 772
           IQRYKGLGEM+ DQL +TTMDP TR + ++ +EDA  A E+F  LMGD+V PR+ FI  N
Sbjct: 737 IQRYKGLGEMNPDQLWETTMDPETRRMMQVTIEDAVGADELFTTLMGDQVEPRRAFIETN 796

Query: 773 A 773
           A
Sbjct: 797 A 797