Pairwise Alignments

Query, 783 a.a., type IIA DNA topoisomerase subunit B from Bifidobacterium breve UCC2003

Subject, 645 a.a., DNA gyrase subunit B from Synechococcus elongatus PCC 7942

 Score =  319 bits (818), Expect = 3e-91
 Identities = 187/512 (36%), Positives = 286/512 (55%), Gaps = 28/512 (5%)

Query: 281 GFAELSDDASVDGDTEAPDEEDFSLSSATEVVDGAFGEQPAHPRTVEFLHTGGVKDFVD- 339
           G  +++ DA     T+   + D ++ S T   D  +G   +  + + +L+ G   DF D 
Sbjct: 151 GELQVAPDADDRRGTQVRFKPDATIFSETTEFD--YGTLASRLKELAYLNAGVRIDFTDE 208

Query: 340 ---FLSKGEPISDIWRIQGE----GTYKEETQAVGEGGELHAQEIERTCGVDIALRW-VN 391
                   EP  + +  +G       Y    +       +  Q  +    V+ AL+W V+
Sbjct: 209 RLQLTKNHEPHQETYYFEGGIREYVAYMNTDKQALHSEIIFVQSEKDGVQVEAALQWCVD 268

Query: 392 GYDTTIMSFVNIVETPGGGMHVDGFMNAITKQIRKAVEDNARKLKVNLKDSAMKVERDDI 451
            Y   I+ F N + T  GG H++G    +T+ +        ++     KD+   +  ++I
Sbjct: 269 AYSDNILGFANNIRTIDGGTHIEGLKTVLTRTMNTIARKRNKR-----KDADNNLSGENI 323

Query: 452 QAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGEMITGSKRGYKEQSARV 511
           + GL A+V+ +V +P+F+GQTK  LG  +V+ IV  L     GE +T     +   +  +
Sbjct: 324 REGLTAIVSVKVPDPEFEGQTKTKLGNTEVRGIVDTLV----GETLTEYLEFHPSVADLI 379

Query: 512 LEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGNDDVAELFIVEGDSALGT 571
           LEK +   +A   +R+A+E+ RRK+ LES+++P KL+DC   +   +E+FIVEGDSA G+
Sbjct: 380 LEKAIQAFNAAEAARRARELVRRKSVLESSTLPGKLADCSSRDPGESEIFIVEGDSAGGS 439

Query: 572 AKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAG-SGQSFDIEQSRYH 630
           AK  R+  FQA+LP+RGKILN++K    ++  N E  A+I  +G G  G+ FD  Q RYH
Sbjct: 440 AKQGRDRRFQAILPLRGKILNIEKTDDAKIYKNTEIQALITALGLGIKGEEFDASQLRYH 499

Query: 631 KIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIALTGSHKGEYIYTY 690
           +I++MTDADVDGAHIR LLLT FYRY R L+E GY+Y A PPL+++    +H     Y Y
Sbjct: 500 RIVIMTDADVDGAHIRTLLLTFFYRYQRSLLEQGYIYIACPPLYKLERGRNH----YYCY 555

Query: 691 SDDELAGKLADLDKKRIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRRIRMEDAAQA 750
           ++ EL  ++A   +     N  IQR+KGLGEM   QL +TTMDP TR ++R+ +EDAA+A
Sbjct: 556 NERELQERIATFPENA---NYTIQRFKGLGEMMPQQLWETTMDPETRTMKRVEIEDAAEA 612

Query: 751 SEIFNLLMGDEVPPRKQFIVDNADDFDRSKID 782
             IF +LMGD V PR++FI         + +D
Sbjct: 613 DRIFTILMGDRVQPRREFIETYGPQLSMAALD 644



 Score =  211 bits (538), Expect = 8e-59
 Identities = 112/235 (47%), Positives = 146/235 (62%), Gaps = 25/235 (10%)

Query: 5   EYGAKDLSVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNNIVVTLH 64
           EYGA  + VLEGL+ VRKRPGMYIG+T  +GL H ++E++DN+VDEALAG+CN I V L 
Sbjct: 4   EYGASQIQVLEGLEPVRKRPGMYIGSTGPKGLHHLVYEVVDNAVDEALAGYCNTIDVRLL 63

Query: 65  TDGSVEVADNGRGIPVDKEPKTGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGSSVVN 124
            DGS +V DNGRGIP D  P+TG S +E VLT LHAG KFG   Y   GGLHGVG SVVN
Sbjct: 64  EDGSCQVTDNGRGIPTDIHPQTGKSALETVLTILHAGGKFGGGGYKVSGGLHGVGVSVVN 123

Query: 125 ALSSRLDVEVDRDGKTHHMAFHQGHPGVYADADPVNPSPDSPFKRTRKNKPTELEIIGKV 184
           ALS  ++V V R+GKTH   F QG+P        +  +PD+  +R               
Sbjct: 124 ALSEYVEVTVWREGKTHQQRFEQGNP-----IGELQVAPDADDRR--------------- 163

Query: 185 SPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIVDENVPKT 239
                GT++R+  D  IF++T EF Y  L  R+++ ++L  G++I   DE +  T
Sbjct: 164 -----GTQVRFKPDATIFSETTEFDYGTLASRLKELAYLNAGVRIDFTDERLQLT 213