Pairwise Alignments

Query, 783 a.a., type IIA DNA topoisomerase subunit B from Bifidobacterium breve UCC2003

Subject, 665 a.a., Gram negative topoisomerase IV, subunit B (NCBI) from Rhodospirillum rubrum S1H

 Score =  236 bits (603), Expect = 2e-66
 Identities = 149/400 (37%), Positives = 219/400 (54%), Gaps = 26/400 (6%)

Query: 383 VDIALRWVNGYDTTIMSFVNIVETPGGGMHVDGFMNAITKQIRKAVEDNARKLKVNLKDS 442
           V+ AL W    +    S+VN + TP GG H  G  NA+T+ +R   E +  K        
Sbjct: 275 VEWALCWPEDDEPFFNSYVNTIPTPEGGTHEAGLRNALTRGLRSFAEMSGNK------KG 328

Query: 443 AMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGEMITGSKR 502
           A  +  +D+  G   + +  + +PQFQGQTK+ L + +   +V +     F   +TG+  
Sbjct: 329 AAALTAEDVVGGAAVMFSMFLRDPQFQGQTKEKLASQEATRLVEQALRDPFDHWLTGAPD 388

Query: 503 GYKEQSARVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGNDDVAELFI 562
                    LE+       R++ R+AKE T RK A +   +P KLSDC        ELF+
Sbjct: 389 SANLLLTHALERA----DERLRRRQAKE-TSRKTATKKLRLPGKLSDCTRSTRQGTELFL 443

Query: 563 VEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAGSGQSF 622
           VEGDSA G+AK AR+   QA+LP+RGKILNV  AS+ ++  N+E + + + +G G+  +F
Sbjct: 444 VEGDSAGGSAKQARDRQTQAVLPLRGKILNVASASLDKLRGNQELSDLAEALGCGTRGAF 503

Query: 623 DIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIALTGSH 682
           D+E  RY K+++MTDADVDGAHI  LL+T F+R M  L+  G++Y A+PPL+R+    + 
Sbjct: 504 DLEHLRYDKVVIMTDADVDGAHIASLLMTFFFREMPALVSAGHLYLAMPPLYRL----TQ 559

Query: 683 KGEYIYTYSDDELAGKLADLDKKRIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLRRI 742
            G  +Y   DD    +L     K  G   +I R+KGLGEM   QL +TTM   TR L R+
Sbjct: 560 GGTSVYA-RDDAHKDQLMKTVFKTKG-KVEISRFKGLGEMPPAQLRETTMAYATRQLLRV 617

Query: 743 RM---------EDAAQASEIFNLLMGDEVPPRKQFIVDNA 773
            +         EDA + +++   LMG +   R +FI +NA
Sbjct: 618 TVPGGKTEEDREDARETAKLVEELMGRKPELRFRFIQENA 657



 Score =  166 bits (420), Expect = 4e-45
 Identities = 107/255 (41%), Positives = 139/255 (54%), Gaps = 34/255 (13%)

Query: 2   PKEEYGAKDLSVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNNIVV 61
           P + Y A+ + VLEGL+ VR+RPGMYIG TD + L H + EI+DN++DEA+AG+   I +
Sbjct: 13  PADAYTARSIEVLEGLEPVRRRPGMYIGGTDERALHHLVAEILDNAMDEAVAGYAQVIDI 72

Query: 62  TLHTDGSVEVADNGRGIPVDKEPK-TGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS 120
            L  DGSV V DNGRGIP+D  P+    S +EV+LT LH+G KFG  +Y   GGLHGVG 
Sbjct: 73  DLAVDGSVCVRDNGRGIPIDPHPRFPDKSALEVILTTLHSGGKFGGDAYKVSGGLHGVGI 132

Query: 121 SVVNALSSRLDVEVDRDGKTHHMAFHQGHPGVYADADPVNPSPDSPFKRTRKNKPTELEI 180
           SVVNALS  L VEV RD       F +G         P+ P                L+ 
Sbjct: 133 SVVNALSDSLRVEVARDRTLWAQDFCRG--------APLGP----------------LQK 168

Query: 181 IGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKI--TIVDENVPK 238
           IG  +P   GT++R+  D EIF   A F    L    R  ++L  G++I  +   E +P 
Sbjct: 169 IGP-APNRRGTQVRFHPDAEIFGPRARFKPALLHRMARSKAYLFRGVRIRWSCAPELLPD 227

Query: 239 TNGADTVGTEPNEDV 253
             G       P EDV
Sbjct: 228 DAGV------PAEDV 236