Pairwise Alignments

Query, 783 a.a., type IIA DNA topoisomerase subunit B from Bifidobacterium breve UCC2003

Subject, 805 a.a., DNA gyrase, B subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  240 bits (612), Expect = 3e-67
 Identities = 136/352 (38%), Positives = 207/352 (58%), Gaps = 32/352 (9%)

Query: 328 FLHTGGVKDFVDFLSKGE-PIS-DIWRIQGEGTYKEETQAVGEGGELHAQEIERTCGVDI 385
           F + GG+  FVD+L++ + P++ D++                       QE +    V++
Sbjct: 216 FKYEGGISAFVDYLNRNKTPVNKDVFHFM--------------------QERDDGITVEV 255

Query: 386 ALRWVNGYDTTIMSFVNIVETPGGGMHVDGFMNAITKQIRKAVEDNARKLKVNLKDSAMK 445
           A++W +GY   I  F N +    GG H+ GF +A+T+ +   +E+         K     
Sbjct: 256 AMQWNDGYQENIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMENEGYN-----KKGKTN 310

Query: 446 VERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGEMITGSKRGYK 505
              DD + GL AV++ +V +P+F  QTKD L +++VK  V    ++  GE +        
Sbjct: 311 ATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAV----EQTMGEKLNDYLLENP 366

Query: 506 EQSARVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGNDDVAELFIVEG 565
             +  ++ KIV    AR  +RKA+E+TRRK AL+   +P KL+DCQ  +  ++E++IVEG
Sbjct: 367 ADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEG 426

Query: 566 DSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAGSGQ-SFDI 624
           DSA G+AK  RN   QA+LP++GKILNV+KA   +MLS++E A +I  +G G G+  ++ 
Sbjct: 427 DSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIGRDEYNP 486

Query: 625 EQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRI 676
           +++RYH II+MTDADVDG+HIR LLLT F+R M  LIE GYVY A PPL ++
Sbjct: 487 DKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFKV 538



 Score =  202 bits (515), Expect = 4e-56
 Identities = 117/266 (43%), Positives = 153/266 (57%), Gaps = 33/266 (12%)

Query: 1   MPKEEYGAKDLSVLEGLDAVRKRPGMYIGTTDS-QGLMHCLWEIIDNSVDEALAGFCNNI 59
           M +  Y +  + VL+GLDAVRKRPGMYIG TD   GL H ++E++DNS+DEALAG C +I
Sbjct: 1   MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDI 60

Query: 60  VVTLHTDGSVEVADNGRGIPVDKEPKTGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVG 119
            +T+H DGSV V D+GRGIPV    + G+S  EV++T LHAG KF ++SY   GGLHGVG
Sbjct: 61  TITIHVDGSVSVKDDGRGIPVSIHEEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG 120

Query: 120 SSVVNALSSRLDVEVDRDGKTHHMAFHQGHPGVYADADPVNPSPDSPFKRTRKNKPTELE 179
            SVVNALS +L + + RDGK H   +  G              PD+P K           
Sbjct: 121 VSVVNALSKKLQLTIRRDGKVHEQFYTHG-------------VPDAPIKE---------- 157

Query: 180 IIGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIVDENVPKT 239
            IG  +   TGT IR+W   + F+   EF +E L  RVR+ SFL  G+ I +VDE   K 
Sbjct: 158 -IGDAT--KTGTEIRFWPSEQTFS-NVEFHFEILAKRVRELSFLNSGVGIRLVDERDNKN 213

Query: 240 NGADTVGTEPNEDVAVVAESLNANET 265
                 G      ++   + LN N+T
Sbjct: 214 EFFKYEG-----GISAFVDYLNRNKT 234



 Score = 73.9 bits (180), Expect = 3e-17
 Identities = 33/61 (54%), Positives = 47/61 (77%)

Query: 713 IQRYKGLGEMDADQLADTTMDPRTRMLRRIRMEDAAQASEIFNLLMGDEVPPRKQFIVDN 772
           IQRYKGLGEM+ +QL +TTMDP +R + ++ ++DA  A ++F  LMGD+V PR++FI  N
Sbjct: 737 IQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQLFTCLMGDQVEPRREFIEAN 796

Query: 773 A 773
           A
Sbjct: 797 A 797