Pairwise Alignments

Query, 783 a.a., type IIA DNA topoisomerase subunit B from Bifidobacterium breve UCC2003

Subject, 659 a.a., DNA topoisomerase IV, B subunit, proteobacterial from Sphingomonas koreensis DSMZ 15582

 Score =  233 bits (594), Expect = 2e-65
 Identities = 149/406 (36%), Positives = 220/406 (54%), Gaps = 25/406 (6%)

Query: 383 VDIALRWVNGYDTTIMSFVNIVETPGGGMHVDGFMNAITKQIRKAVEDNARKLKVNLKDS 442
           V+ A+ W    D +   + N + TP GG H  G   A+ + IR   E   +K        
Sbjct: 272 VEWAVAWPLWSDGSYSWYCNTIPTPDGGTHEQGLRQALVRGIRAFGELVGQK-------K 324

Query: 443 AMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGEMITGSKR 502
           A  +  DDI  G   +++  + EPQFQ QTKD L + +   +V +     F   +     
Sbjct: 325 AKDITADDIMVGSELMLSVFIREPQFQSQTKDRLTSPEATALVEKAVRDHFDHFLADRM- 383

Query: 503 GYKEQSARVLEKIVGEMHARIQSRKAKEVTRRKNALESASM--PAKLSDCQPGNDDVAEL 560
              ++   +L  ++  M  R++ ++ +EV +RK A     +  P KL+DC   +    EL
Sbjct: 384 ---DRGKALLGYVLDRMDERLRRKQEREV-KRKTATSGRKLRLPGKLTDCSADDPAGTEL 439

Query: 561 FIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAGSGQ 620
           FIVEGDSA G+AK AR+   QA+LPIRGKILNV  A+  ++L+N+E A +IQ +G G+ +
Sbjct: 440 FIVEGDSAGGSAKQARDRKTQAILPIRGKILNVASATSAKILANQEIADLIQALGCGTRK 499

Query: 621 SFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIALTG 680
              ++  RY +I++MTDADVDGAHI  LL+T F++ M  ++  G++Y A PPL+R  LT 
Sbjct: 500 DCVVDNLRYERIVIMTDADVDGAHIATLLMTFFFQEMPDIVRRGHLYLAQPPLYR--LTA 557

Query: 681 SHKGEYIYTYSDDELAGKLADLDKKRIGYNDDIQRYKGLGEMDADQLADTTMDPRTRMLR 740
             K   +Y   D   A   A+  K   G   D+ R+KGLGEM+  QL +TTMDP+TR + 
Sbjct: 558 GTKS--LYARDDAHRAEIEANAFK---GRKVDVARFKGLGEMNPGQLRETTMDPKTRSMI 612

Query: 741 RIRM----EDAAQASEIFNLLMGDEVPPRKQFIVDNADDFDRSKID 782
           RI +    E+ A   ++ + LMG     R  FI +NA   D   ID
Sbjct: 613 RITLPQEYEERAGVKDLVDRLMGTNPAHRFAFIQENAARLDEEAID 658



 Score =  151 bits (381), Expect = 1e-40
 Identities = 103/276 (37%), Positives = 138/276 (50%), Gaps = 30/276 (10%)

Query: 2   PKEEYGAKDLSVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNNIVV 61
           P   Y A  + VLEGL+ VR+RPGMYIG TD + L H   E++DN++DEA+AG  N I V
Sbjct: 13  PANSYDASSIEVLEGLEPVRRRPGMYIGGTDERALHHLAAEVLDNAMDEAVAGHANRIEV 72

Query: 62  TLHTDGSVEVADNGRGIPVDKEPK-TGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS 120
           TL     + + DNGRG P+D  PK    S +EV+L+ LH+G KF   +Y   GGLHGVG 
Sbjct: 73  TLDVGNRLTITDNGRGFPIDPHPKFPDKSALEVILSMLHSGGKFSGKAYATSGGLHGVGI 132

Query: 121 SVVNALSSRLDVEVDRDGKTHHMAFHQGHPGVYADADPVNPSPDSPFKRTRKNKPTELEI 180
           SVVNALS    VEV RD + +   F +G          + P                LE 
Sbjct: 133 SVVNALSVDTVVEVARDKQLYRQRFSRG--------QTLGP----------------LEH 168

Query: 181 IGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKI--TIVDENVPK 238
           +G  +P   G+ + +  D EIF +   F   +L    R  ++L  G++I      E +  
Sbjct: 169 LGG-TPNRRGSLVSFTPDSEIFGE-MNFKPARLYKLARSKAYLFAGVEIRWKCAPELISD 226

Query: 239 TNGADTVGTEPNEDVAVVAESLNANETANATESFSG 274
              A+ V   P      + E L   E A A E FSG
Sbjct: 227 DTPAEAVFQFPGGLADHLKEQLGTREGATA-EFFSG 261