Pairwise Alignments

Query, 783 a.a., type IIA DNA topoisomerase subunit B from Bifidobacterium breve UCC2003

Subject, 845 a.a., DNA gyrase subunit B from Cupriavidus basilensis FW507-4G11

 Score =  246 bits (627), Expect = 5e-69
 Identities = 145/379 (38%), Positives = 221/379 (58%), Gaps = 37/379 (9%)

Query: 327 EFLHTGGVKDFVDFLSKGEPISDIWRIQGEGTYKEETQAVGEGGELHAQEIERTCGVDIA 386
           +F  +GGVK FV++++KG+             +   T+  G               V+++
Sbjct: 247 DFAFSGGVKGFVEYINKGKSTLH------PNIFYANTEKDG-------------IAVEVS 287

Query: 387 LRWVNGYDTTIMSFVNIVETPGGGMHVDGFMNAITKQIRKAVEDN--ARKLKVNLKDSAM 444
           ++W +GY+  ++ F N +    GG H+ G   A+T+ + K +E+N  A+K KV       
Sbjct: 288 MQWNDGYNEQVLCFTNNIPQRDGGTHLTGLRAAMTRVMNKYIEENEIAKKAKV------- 340

Query: 445 KVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQFGEMITGSKRGY 504
           +   DD++ GL  V++ +V EP+F  QTKD L +++V+  V  L  K  G+ +  +    
Sbjct: 341 ETTGDDMREGLACVLSVKVPEPKFSSQTKDKLVSSEVRLPVEELVAKALGDFLLETPVDA 400

Query: 505 KEQSARVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQPGNDDVAELFIVE 564
           K     +  KIV    AR  +RKA+E+TRRK  L+   +P KL+DCQ  +   +ELF+VE
Sbjct: 401 KI----ICGKIVDAARAREAARKAREMTRRKGVLDGMGLPGKLADCQEKDPAQSELFLVE 456

Query: 565 GDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQVVGAGSGQ-SFD 623
           GDSA G+AK  R+  FQA+LP++GKILNV++A   +MLS++E   +I  +G G G+  ++
Sbjct: 457 GDSAGGSAKQGRDRKFQAILPLKGKILNVERARFDKMLSSQEVLTLITALGTGIGKDDYN 516

Query: 624 IEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPPLHRIALTGSHK 683
           +++ RYH+II+MTDADVDG+HIR LLLT FYR M  +IE G+VY A PPL++I     H 
Sbjct: 517 LDKLRYHRIIIMTDADVDGSHIRTLLLTFFYRQMPDIIERGHVYIAQPPLYKI----KHG 572

Query: 684 GEYIYTYSDDELAGKLADL 702
            E  Y   D+EL   L  L
Sbjct: 573 KEERYIKDDNELNAYLLRL 591



 Score =  189 bits (480), Expect = 5e-52
 Identities = 108/248 (43%), Positives = 144/248 (58%), Gaps = 29/248 (11%)

Query: 3   KEEYGAKDLSVLEGLDAVRKRPGMYIG-TTDSQGLMHCLWEIIDNSVDEALAGFCNNIVV 61
           ++ YGA  + +LEGL+AVRKRPGMYIG T+D  GL H ++E++DNS+DEALAG+C  I V
Sbjct: 14  QDSYGAGSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDEALAGWCTEITV 73

Query: 62  TLHTDGSVEVADNGRGIP----VDKEPKTGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHG 117
           T+H+D S+ + DNGRGIP     D + +   S  E+ +T+LHAG KF  +SY   GGLHG
Sbjct: 74  TIHSDNSISITDNGRGIPPLVKFDDKHEPKRSAAEIAMTELHAGGKFNQNSYKVSGGLHG 133

Query: 118 VGSSVVNALSSRLDVEVDRDGKTHHMAFHQG-------HPGVYADADPVNPSPDSPFKRT 170
           VG S VNALS  L + V RDG+ H + F QG             D  PV  SP       
Sbjct: 134 VGVSCVNALSKWLRLTVRRDGQAHLLEFAQGAVQNRLVETVTGPDGQPVEVSP------- 186

Query: 171 RKNKPTELEIIGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKIT 230
                  ++I+G    +  GT + +  D EIF    EF YE L  R+R+ SFL  G+ I 
Sbjct: 187 -------MKILGPTDKR--GTEVHFLADEEIFT-NVEFHYEILAKRIRELSFLNNGVHIR 236

Query: 231 IVDENVPK 238
           + D+   K
Sbjct: 237 LADQRTGK 244



 Score = 72.0 bits (175), Expect = 1e-16
 Identities = 34/60 (56%), Positives = 44/60 (73%)

Query: 714 QRYKGLGEMDADQLADTTMDPRTRMLRRIRMEDAAQASEIFNLLMGDEVPPRKQFIVDNA 773
           QRYKGLGEM+ +QL +TT+D   R L ++++EDA  A +IF  LMGDEV PR+ FI  NA
Sbjct: 778 QRYKGLGEMNPEQLFETTLDVTQRRLLKVQIEDAIAADQIFTTLMGDEVEPRRNFIESNA 837