Pairwise Alignments

Query, 783 a.a., type IIA DNA topoisomerase subunit B from Bifidobacterium breve UCC2003

Subject, 695 a.a., topoisomerase IV subunit B from Caulobacter crescentus NA1000

 Score =  242 bits (617), Expect = 6e-68
 Identities = 158/412 (38%), Positives = 228/412 (55%), Gaps = 27/412 (6%)

Query: 371 ELHAQEIER---TCGVDIALRWV----NGYDTTIMSFVNIVETPGGGMHVDGFMNAITKQ 423
           E  A  IER      V+ A+ W       +D  + S+ N V TP GG H  GF  A+T+ 
Sbjct: 295 ESFAGRIERQGEAGAVEWAVTWTPQGFGEHDGFMQSYCNTVPTPEGGTHESGFRAALTRG 354

Query: 424 IRKAVEDNARKLKVNLKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKP 483
           ++   E    K           +  DD+ A   A+++  +  P+FQGQTK+ L T++ + 
Sbjct: 355 LKAYAELKGEK-------RGTIITADDVVAQAGALISVFIKNPEFQGQTKEKLSTSEAQR 407

Query: 484 IVTRLTDKQFGEMITGSKRGYKEQSARVLEKIVGEMHARIQSRKAKEVTRRKNALESASM 543
            V       F   ++ S +     +  +LE ++     R++ RK KEV+R  +A     +
Sbjct: 408 FVEASLRDPFDLWLSSSPKN----AQALLEFVIERAEERLKRRKDKEVSRA-SATRKLRL 462

Query: 544 PAKLSDCQPGNDDVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLS 603
           P KL+DC     D AELFIVEGDSA G+AK AR+  +QA+LP+RGKILNV  AS  +  +
Sbjct: 463 PGKLADCAGSAVDGAELFIVEGDSAGGSAKQARDRKYQAILPLRGKILNVASASGEKFTA 522

Query: 604 NKECAAIIQVVGAGSGQSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEH 663
           NKE + ++  +GA +G  +  E  RY +II+MTDADVDGAHI  LL+T FYR M  LI  
Sbjct: 523 NKELSDLMLALGAQAGAKYREEDLRYERIIIMTDADVDGAHIASLLITFFYRTMPELIRG 582

Query: 664 GYVYAAVPPLHRIALTGSHKGEYIYTYSDDELAGKLADLDKKRIGYNDDIQRYKGLGEMD 723
           G+++ A+PPL+R+A    H G+  Y   D      LA + K   G   +I R+KGLGEM 
Sbjct: 583 GHLFLALPPLYRLA----HGGKSEYARDDAHKEELLATVFK---GKKPEIGRFKGLGEMM 635

Query: 724 ADQLADTTMDPRTRMLRRIRMEDAAQASE-IFNLLMGDEVPPRKQFIVDNAD 774
           A QL +TTMDP+ R L R+ +    ++ E +   LMG +   R +FI +NA+
Sbjct: 636 ASQLKETTMDPKKRTLARVTLPRHEESVEDLVETLMGRKPELRFRFIQENAE 687



 Score =  175 bits (444), Expect = 7e-48
 Identities = 102/227 (44%), Positives = 130/227 (57%), Gaps = 29/227 (12%)

Query: 5   EYGAKDLSVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNNIVVTLH 64
           EY A D+ VLEGL+ VRKRPGMYIG TD + L H   E++DNS+DEA+AGF   I V L 
Sbjct: 54  EYSAADIEVLEGLEPVRKRPGMYIGGTDERALHHLFAEVLDNSMDEAVAGFAKTIEVKLD 113

Query: 65  TDGSVEVADNGRGIPVDKEPK-TGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGSSVV 123
            DG + V D+GRG+PVD  PK  G S +EV++T LHAG KF   +Y   GGLHGVG+SVV
Sbjct: 114 ADGFLSVKDDGRGMPVDPHPKYPGKSALEVIMTVLHAGGKFTGKAYETSGGLHGVGASVV 173

Query: 124 NALSSRLDVEVDRDGKTHHMAFHQGHPGVYADADPVNPSPDSPFKRTRKNKPTELEIIGK 183
           NALS R++V V RDG  H   F +G P                           L  I +
Sbjct: 174 NALSERVEVTVWRDGFEHLQVFSRGKP---------------------------LGPIQQ 206

Query: 184 VSP-KTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKI 229
           V+P K  GT +R+  D EIF +   F   +L    R  ++L  G++I
Sbjct: 207 VAPSKKKGTMVRFKPDDEIFGEGTNFKPARLYRMARSKAYLFRGVQI 253