Pairwise Alignments

Query, 349 a.a., DNA cytosine methyltransferase from Bifidobacterium breve UCC2003

Subject, 369 a.a., C-5 cytosine-specific DNA methylase family protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  138 bits (348), Expect = 2e-37
 Identities = 115/368 (31%), Positives = 166/368 (45%), Gaps = 39/368 (10%)

Query: 3   KRSKIAAIDLFCGTGGLSLGLKQGGIRVVAGIDNASACSYPYSHNI------KAKFIERS 56
           K +   A+DLFCG GG SL  +  GI VVA ++N    +  Y HN            E  
Sbjct: 7   KHTPAKAVDLFCGAGGFSLAARNLGIEVVAALENNHYAAATYRHNFIEGSRRPPLLFEGD 66

Query: 57  VCDVTGEDLKRLWG--QADVRLLAGCAPCQPFSSQR-RGADTSHEKSWPLLNEFARLVQE 113
           +  ++ E   +        V ++ G  PCQ FS+ R +GA     ++  LL  F   VQ 
Sbjct: 67  ILAISPEAFMQAANLTPGGVDIIMGGPPCQGFSTHRIKGAGIDDPRNTLLLRYF-EYVQA 125

Query: 114 TMPDFVTMENVPRVQYSPIFDEFVARL----KQAGYDVTY-RVLFGPDYGLPQRRRRLVL 168
             P +  +ENVP + + P  +E++ R      +AGY V+  +VL   DYG+PQ R+R+ +
Sbjct: 126 IRPRYFLVENVPGLLW-PRHEEYLQRFYKLATEAGYHVSPPQVLNARDYGVPQNRKRVFI 184

Query: 169 LAALNDHIEM---PEPTVGADRYRTVYDAIHDLPS-LEAGQ-------KDDDDSLHFARN 217
           L     H      P PT  A     V      LP+   A Q        DD +++H    
Sbjct: 185 LGTAGGHTLPDWPPRPTHFAPESSQV--RAEGLPAWCTAAQVFATELANDDPNAIHLNHR 242

Query: 218 LSPTNLKRAHASKPGGTWEDWPEELRAPCQTRDSGKSFKSFYGRMEWNKPSPTITTQSYN 277
                + R+     GG+ +     L  PC    +G   K  YGR+  + P PT+TT   N
Sbjct: 243 PEMVEVFRSTPLN-GGSRQQSCRVL--PCHRNHNGH--KDVYGRINPDAPGPTMTTACTN 297

Query: 278 PGAGRFTHPAQDRALTLREASRLQGFPDSFVFTGPSEKITLSTVGRLIGNAVPPVFGKAI 337
           P  GRF HP Q   +T+R A+R Q FP++F F G      +      +GNAVP   G A+
Sbjct: 298 PSKGRFLHPTQHHGITVRHAARFQTFPETFTFKG-----GIMAASAQVGNAVPIDLGMAV 352

Query: 338 ARQFIKTL 345
            R  +  L
Sbjct: 353 IRPLLSAL 360