Pairwise Alignments

Query, 400 a.a., ADP-forming succinate--CoA ligase subunit beta from Bifidobacterium breve UCC2003

Subject, 388 a.a., succinyl-CoA synthase, beta subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  219 bits (559), Expect = 8e-62
 Identities = 142/405 (35%), Positives = 211/405 (52%), Gaps = 25/405 (6%)

Query: 1   MDLYEYQARQLLEEQDIPTPGAIFAQNSHEVAEAADKIGYPC-VIKAQVKIGHRGQAGGV 59
           M+L+EYQA+ L  E  +P         + E  EAA +IG    V+K QV  G RG+AGGV
Sbjct: 1   MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGRIGGNLWVVKCQVHAGGRGKAGGV 60

Query: 60  KIAHNRDEAILESESILPMTI-------HGHKVSGVLVAEAKNILHEYYVSISVDRTSRD 112
           K+  +++E    +E  L   +        G  V+ +LV    +I +E Y+   VDR +R 
Sbjct: 61  KVTGDKEEIRAFAEYWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRATRR 120

Query: 113 FDVLATANGGTEVEEIAKEHPEAVKRLHIDALDDFDLEAATKMAASIGFYHADVDQAAQI 172
              +A+  GG E+E++A+E PE + +  ID L       A  +   +G     + Q  +I
Sbjct: 121 VVFMASTEGGVEIEKVAEETPELIHKAIIDPLTGPQPFQARDLGFKLGLNPTQMKQFTKI 180

Query: 173 LLKMWQCFKDNDATLVEINPLAKIGDPDDESTKQLSALDAKISLDDNAAFRHDGWARFVD 232
            + +   F D+D  L+EINPL    + +      L  LD KI +D NA FR        D
Sbjct: 181 FMGLATMFVDHDFALLEINPLVITTEGN------LHCLDGKIGIDGNALFRQPKIKAMHD 234

Query: 233 PIVPDPFEQRAREHGLHYVHLHGEVGVIGNGAGLVMSSLDAVSGAGEEQGSGIKPANFLD 292
           P   D  E  A    L+YV L G VG + NGAGL M ++D V+  G       KPANFLD
Sbjct: 235 PSQDDAREAHAAMFELNYVALDGNVGCMVNGAGLAMGTMDIVNLHGG------KPANFLD 288

Query: 293 IGGGASATVMAESLEIVLSDPQVESVFINVYGGITSCVEVANGILEAVAKLGGSKPIVVR 352
           +GGGA+   +AE+ +I+LSD  V++V +N++GGI  C  +A GI+ AV ++G   P+VVR
Sbjct: 289 VGGGATKERVAEAFKIILSDSNVKAVLVNIFGGIVRCDMIAEGIIGAVKEVGVKVPVVVR 348

Query: 353 FDGNAAAEGLHILAEANNPNIHVSETMEGAAQKAAELAAESTQSK 397
            +G  A  G  +LA++    I  +   +     AAEL  ++ + K
Sbjct: 349 LEGTNAELGREVLAKSGLDIIAANSLTD-----AAELVVKAAEGK 388