Pairwise Alignments

Query, 445 a.a., branched-chain amino acid transport system II carrier protein from Bifidobacterium breve UCC2003

Subject, 462 a.a., branched-chain amino acid transport system II carrier protein BrnQ (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  232 bits (592), Expect = 2e-65
 Identities = 148/455 (32%), Positives = 229/455 (50%), Gaps = 41/455 (9%)

Query: 10  LVMTFTFFSMFFGAGNLIFPPFVGAQAGSATMPAAIGFIVSAVGLPILGVLAVTFAGGFD 69
           L + F  F+ F GAGNLIFPPF G  AG   + A +GF+++AVGLP++G++AV  A G  
Sbjct: 7   LGLGFMTFAFFLGAGNLIFPPFAGMLAGENMLLAMLGFLITAVGLPLVGLIAVAKAQG-- 64

Query: 70  KLAGRVSPKFALFLGVAIMLTIGPCFAIPRTATTSFEMMVAPFVPTSYDW---------L 120
           K+   +    A  L +AI + IGP FA PRT   ++E+   PF+  +            L
Sbjct: 65  KVMAMLPVFAATALAIAIYIIIGPAFAAPRTGLVAYEIGAKPFIDNTTATIMLGSLSLNL 124

Query: 121 AQLIYSLVFFSLAFLFAQHPEKLSKVLGRFMGPLLLVLIAVLFIACLVHGIGTPAKPMGD 180
           +QLIY+L FF +  L A  P KL   +G+ + P+LL+L+  L ++ L          +GD
Sbjct: 125 SQLIYTLGFFIVTMLLALFPGKLLDSVGKVLTPILLLLLVGLALSVLFLPASEVGVAVGD 184

Query: 181 YSTNQIARGFLDGYQTMDLLAALYFGIVISANIRAQQVDDESLVQKETAYAGLGTGVLLI 240
           Y  + + +G L+GY TMD LA+L FG++I   +R + ++  S   K    A       L 
Sbjct: 185 YKNHPLTKGILEGYNTMDTLASLMFGMLIIDLLRKKGIEQPSAQTKYLIRAAFIAAAGLA 244

Query: 241 VIYGALSYVGVVSGAIASIDPAKDTGATVLTNLTSSLFGTFGTAFLGVVFVIACLNVCTG 300
            +Y +L ++G  +G IA+       G  +LTN  +  FG+ GT  L  V  +ACL    G
Sbjct: 245 FVYVSLFFLGATAGDIAA---GAKNGGEILTNYVTREFGSLGTVLLSAVVTLACLTTAVG 301

Query: 301 LICTCATYFHTRFQTVAGRTLSYRTWQIIFTVFSFIVSNAGLSAIIKVSVPVLSALYPIA 360
           L+  C+ +F+          LSYR   +  +    +++N GLS +I +S+PVL A+YP+A
Sbjct: 302 LVSACSEFFNELMP-----KLSYRFLVVALSAICALIANVGLSQLINISIPVLMAVYPVA 356

Query: 361 IVLVLLALTHKKLGARFPRVYF------WTVLLVGI------------ASFATCISSLAA 402
           I LV +      L   FPR  F         LL GI                  I+  A 
Sbjct: 357 IALVAVTF----LTEYFPRPQFAHRAALSVALLFGIFDGMKVAAKSLTGEDGRGITEFAQ 412

Query: 403 VFGGSIGWLDAALAMLPLQQYQLGWVMPAIIGLAI 437
            F   +  +   L++LPL +  + W++P ++ + +
Sbjct: 413 SFIDFVNGMSPTLSILPLYEEGMAWLLPTLVVIVL 447