Pairwise Alignments

Query, 321 a.a., RNase adapter RapZ from Bifidobacterium breve UCC2003

Subject, 293 a.a., hypothetical protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  198 bits (504), Expect = 1e-55
 Identities = 110/284 (38%), Positives = 172/284 (60%), Gaps = 4/284 (1%)

Query: 33  FEVLLITGMSGAGRSRAADSVEDMGWYVVDNLPPKLLVPLVDMMTTSGSDSGVHKLAAVI 92
           F V+++TG+SGAG+S   + +ED+ ++ VD LP  L   +V ++      S    L   +
Sbjct: 6   FPVIIVTGLSGAGKSTVLNVLEDLRYFTVDGLPASLAPQMVTILNREAL-SHYQGLVLGM 64

Query: 93  DVRSRSYFDDLAAVLGHLDDLGVKTRILFLDASNDVLIKRYESVRRPHPLQ-HGNRLIDG 151
           D+R  ++  +L   L  L  +GV+  ++F++A+  VL +RY + RRPHPL+  G  L   
Sbjct: 65  DLRESNFVRNLEKSLERLQGMGVRPAVVFIEATPAVLNRRYATTRRPHPLESEGMGLEQA 124

Query: 152 ILEERHLLENLKERADWVIDTSSLSIHQLSTKLYE--TMLGSGPTTVAVHIFSFGFKYGM 209
           + +ER  L  ++E AD V+DTSS SIH L   + +  + +     ++ ++I +FGFKYG+
Sbjct: 125 LEQERLRLAPVRETADLVVDTSSYSIHDLRRVIQKKWSSIQGRIRSLRINIVTFGFKYGV 184

Query: 210 PIDADFVADVRFLPNPFWVPSLRELTGADKPVADYVLSSKGAKEFLDSYERAIETAIEGY 269
           P DAD V D+RFLPNP++VP LR L+G D+PVA YVL +   + FL      +   +  Y
Sbjct: 185 PADADLVFDLRFLPNPYFVPDLRPLSGLDEPVAKYVLEAGHGETFLAKLLDFLHFLLPQY 244

Query: 270 AQEDKHFVTIAIGCTGGQHRSVAMSEELARRLRAHGLNVTVSAR 313
             E ++ +TIAIGCTGG+HRSV+++E L R L+     V++  R
Sbjct: 245 EAEGRYRLTIAIGCTGGRHRSVSVAEALLRALKKSDYAVSIEHR 288