Pairwise Alignments

Query, 326 a.a., shikimate 5-dehydrogenase from Bifidobacterium breve UCC2003

Subject, 301 a.a., shikimate 5-dehydrogenase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 48.5 bits (114), Expect = 2e-10
 Identities = 72/299 (24%), Positives = 118/299 (39%), Gaps = 45/299 (15%)

Query: 8   VLGKPIAHSLSPVLHNAAYRSLNLNDWLYDKHEVGEDDLDAFLKGLDSTWA-GLSLTMPL 66
           ++G P+ H+LSP+LHN  + +L+    +Y    V      +F++ + +    G S+T+P 
Sbjct: 39  IVGHPLGHTLSPLLHNWGF-ALHSLPAVYMAWPVPPGRFASFMEAVRTLPVHGASVTIPH 97

Query: 67  KRTIQPYGTPENLWAKELRVANTAVFDWNDITDDPAWPHGKPAIKLYNTDVIGIQLAFDH 126
           K             A+ +   NT   +   +  +             NTDV G       
Sbjct: 98  KEEALRLCDRVTDRARAVGAVNTLFLEDGVVCGE-------------NTDVTGFLAPL-- 142

Query: 127 INRELGNHYAGDRAGTALIIGNGNTATSALAACCMMPEIGHITVAARHPGRNAGLKPVAE 186
                     G R   AL++G G  A + LA    + E+G   V   +   +  ++ +A 
Sbjct: 143 -------RARGVRIDEALVLGAGGAARAVLAG---LVELGVRRVRISNRTHDKAME-LAG 191

Query: 187 KFINTHNPYDEIELSDTSALLNAARTATYVINTIP-GLAANGIANVINTDSESHAEPYSG 245
            F     P+DE            +  A  V+NT P G+     A +  +     A    G
Sbjct: 192 AFGADVVPWDE----------RGSAAAGLVVNTTPCGMQG---ARMGESPLPEGAFSGRG 238

Query: 246 LLLDVVYNPRPTRLMQAWRAHGGRAIGGEEMLLYQALIQVLLMTGIWDDDPPSDADKRL 304
           +  D+VYNP  TR +   RA G     G  M + Q   Q  + TG+   D P++  +RL
Sbjct: 239 MAYDLVYNPLTTRFLADARAAGWETQDGLGMFVEQGREQFRIWTGL---DLPAEGARRL 294