Pairwise Alignments

Query, 892 a.a., alanine--tRNA ligase from Bifidobacterium breve UCC2003

Subject, 900 a.a., alanyl-tRNA synthetase (RefSeq) from Shewanella amazonensis SB2B

 Score =  545 bits (1405), Expect = e-159
 Identities = 351/900 (39%), Positives = 503/900 (55%), Gaps = 56/900 (6%)

Query: 3   TADIAKRYLDYFAKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPKRRMTS 61
           TA +   +L+YF +  H V+ S+SL+  N PT LFT AGM  F    LG +     R  +
Sbjct: 32  TAALRSAFLEYFRQQGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDCFLGMEKRSYVRAAT 91

Query: 62  NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSIGDYFKEEAIHYAWELLTTPQDQGGY 117
            Q+CVR      D+D VG T RH TFF+MLGNFS GDYFKE+AI +AWE LT     G  
Sbjct: 92  AQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFAWEFLT-----GTL 146

Query: 118 GFDPEKLWVTTFTDDEEARSIWKNE-GFDPEHMQIFG-------MEDNFWTTGGPGPGGP 169
               EKL VT +  D+EA  IW  + G   E++   G         DNFW  G  GP GP
Sbjct: 147 KLPKEKLCVTVYHTDDEAFDIWNKQIGVPAENIIRIGDNKGAPFASDNFWQMGDTGPCGP 206

Query: 170 CSEIYVDRGPEY--GRDGGPAADETRFIEIWDLVFENYEVDNVKSKTDLHIVGELAQKNI 227
           C+EI+ D G     GR G P  D  RFIEIW++VF  Y   N +S   L     L +  +
Sbjct: 207 CTEIFYDHGEHIWGGRPGSPEEDGDRFIEIWNIVFMQY---NRQSDGTLD---PLPKPAV 260

Query: 228 DTGAGLERLAYLMQGKQNIYETDEVFPVIEAAERLSGRKYGEDEAADVKFRVVADHVRSA 287
           DTG G+ER++ +MQG  + YE D    +I  A  + G    E+++     RV+ADH+RS 
Sbjct: 261 DTGMGIERISAIMQGVHSNYEIDIFQKLIAKAAEIIGVSDLENKS----LRVIADHIRSC 316

Query: 288 LMIMSDGVRPSNVGRGYVLRRLLRRTVQAMRVLGVTDPVIPELLPVSKEAMVASYPELND 347
             +++DGV PSN GRGYVLRR++RR V+    LG TD    +L+P   EAM  +  EL  
Sbjct: 317 AFLVADGVMPSNEGRGYVLRRIIRRAVRHGNKLGATDTFFYKLVPTLIEAMGDAAKELKA 376

Query: 348 TFHDVSEAAYGEEDAFRRTLENGIEILDVAVKKAKKTADPVVSGSDAFTLHDTYGFPIEL 407
           T   V +A   EE+ F RTLE G+ +LD A+   K      + G   F L+DTYGFP++L
Sbjct: 377 TQTIVEKALKAEEEQFARTLERGLGMLDAALADLK---GDTLDGETVFKLYDTYGFPVDL 433

Query: 408 TLEMAADQGVKVDEAKFRELMAEQKSRARADA-LKKRHNVDLSVYDDFKKTLAKPIDFLG 466
           T ++  ++ +KVDE  F   MAEQ+SRA+A       +N  L +            DF G
Sbjct: 434 TADVCRERNLKVDEEGFNAAMAEQRSRAQAAGQFSADYNAALKI--------DTATDFCG 485

Query: 467 YTDMSARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEAGGQLADQGEILSDDGAV 526
           YT+++A +KV+ + ++G+ SV A    A + V+LD TPFYAE+GGQ+ D+G++L++ G  
Sbjct: 486 YTELAAESKVVALYRDGE-SVDAAEAGAVLVVVLDNTPFYAESGGQVGDKGQLLAE-GVE 543

Query: 527 LEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAIARSHTATHMVHKALREE 586
             V D QK     I H+ +L  G++ VG  + A +D   R     +H+ TH++H ALR+ 
Sbjct: 544 FNVADTQK-FGQGIGHKGQLALGSIKVGDSLKAMVDKKLRHRTELNHSVTHLLHAALRQV 602

Query: 587 LGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKLRDNLAVTTKEMKFDDAI 646
           LG   TQ+GS   P RLRFDF   +   +  + AVE+ VN ++R N  +   EM  ++A 
Sbjct: 603 LGTHVTQKGSLVDPERLRFDFSHFEGVKREELKAVEDLVNTQIRRNHELNFAEMDIEEAK 662

Query: 647 ALGAMHLFGEKYGDVVRVVSIGEDGWSRELCGGTHVDHVGKIGMVNILSEASIGSGVRRV 706
           A GAM LFGEKY   VRVV++G+  +S ELCGGTHV   G IG+  I SE  I +G+RR+
Sbjct: 663 AKGAMALFGEKYDSKVRVVTMGD--FSIELCGGTHVGRTGDIGLFKITSEGGIAAGIRRI 720

Query: 707 DAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNTLLAKLKESDRRLASMYEAQLA 766
           +AV G  A  + A++ A + + +  L      +  ++   L K ++ ++  A + +   A
Sbjct: 721 EAVTGAAAMAYVAQQQAELEEAAALLKGDVASVVAKLKAQLDKARQLEKENAQLKDKLAA 780

Query: 767 AAVPALVEDAKNSAAPVKVAIKNVGHFGAVDALRKTVLDVRGQLGEDAPAVVALAGVNED 826
           AA   L  DA+     VKV +K +    A  ALR     ++ +L +   + V L  +   
Sbjct: 781 AASADLAGDAQEING-VKVLVKRLEGVEA-GALR----GLQDELKQKLKSGVVLLAIGSG 834

Query: 827 DK-PMVAVATNEAARKAGIKAGDLVRGASKILGGGGGGKPDFAQGGGADASKINEALEAL 885
           DK  ++A  T +   K  +KAG+LV   +  +GG GGG+PD AQ GG++ +K++ AL ++
Sbjct: 835 DKVNLIAGVTQDLTGK--VKAGELVAMVAAQVGGKGGGRPDMAQAGGSEPAKLDGALASV 892