Pairwise Alignments

Query, 892 a.a., alanine--tRNA ligase from Bifidobacterium breve UCC2003

Subject, 874 a.a., alanyl-tRNA synthetase (RefSeq) from Shewanella sp. ANA-3

 Score =  524 bits (1349), Expect = e-152
 Identities = 344/897 (38%), Positives = 490/897 (54%), Gaps = 56/897 (6%)

Query: 3   TADIAKRYLDYFAKHDHLVMPSASLISPN-PTTLFTIAGMVPFIPYLLGEQTPPKRRMTS 61
           TA +   +L++F  + H V+ S+SL+  N PT LFT AGM  F    LG       R T+
Sbjct: 5   TAALRSAFLEFFRSNGHQVVDSSSLVPGNDPTLLFTNAGMNQFKDVFLGMDKRSYTRATT 64

Query: 62  NQKCVRT----LDIDEVGKTTRHGTFFQMLGNFSIGDYFKEEAIHYAWELLTTPQDQGGY 117
            Q+CVR      D+D VG T RH TFF+MLGNFS GDYFKE+AI + W  LT        
Sbjct: 65  AQRCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEDAIRFGWTFLTEVLK---- 120

Query: 118 GFDPEKLWVTTFTDDEEARSIW-KNEGFDPEHMQIFG-------MEDNFWTTGGPGPGGP 169
               E+L VT +  D+EA  IW K  G   E++   G         DNFW  G  GP GP
Sbjct: 121 -LPKERLCVTVYQTDDEAFEIWNKKIGVAAENIIRIGDNKGAPYASDNFWQMGDTGPCGP 179

Query: 170 CSEIYVDRGPEY--GRDGGPAADETRFIEIWDLVFENYEVDNVKSKTDLHIVGELAQKNI 227
           C+EI+ D G     GR G P  D  RFIEIW++VF  Y   N ++  ++     L + ++
Sbjct: 180 CTEIFYDHGDHIWGGRPGSPEEDGDRFIEIWNIVFMQY---NRQASGEML---PLPKPSV 233

Query: 228 DTGAGLERLAYLMQGKQNIYETDEVFPVIEAAERLSGRKYGEDEAADVKFRVVADHVRSA 287
           DTG G+ER+A +MQG  + YE D    +I  A  +     G  + ++   RV+ADH+RS 
Sbjct: 234 DTGMGIERIAAIMQGVHSNYEIDIFRALIAKAAEI----IGVTDLSNKSLRVIADHIRSC 289

Query: 288 LMIMSDGVRPSNVGRGYVLRRLLRRTVQAMRVLGVTDPVIPELLPVSKEAMVASYPELND 347
             +++DGV PSN GRGYVLRR++RR V+    LG T+    +L+P   E M  +   L D
Sbjct: 290 AFLVADGVMPSNEGRGYVLRRIIRRAVRHGNKLGATEAFFYKLVPTLIEVMGDAAKGLAD 349

Query: 348 TFHDVSEAAYGEEDAFRRTLENGIEILDVAVKKAKKTADPVVSGSDAFTLHDTYGFPIEL 407
           T   V +A   EE+ F RTLE G+ ILD A+ + +      + G   F L+DTYGFP++L
Sbjct: 350 TQVIVEKALKAEEEQFARTLERGLGILDSALNELQ---GDTLDGETVFKLYDTYGFPVDL 406

Query: 408 TLEMAADQGVKVDEAKFRELMAEQKSRARADA-LKKRHNVDLSVYDDFKKTLAKPIDFLG 466
           T ++  ++ + VDEA F   MAEQ+SRA+A       +N  L +  +          F G
Sbjct: 407 TADVCRERNIIVDEAGFEVAMAEQRSRAQAAGNFGADYNAALKIDAETA--------FCG 458

Query: 467 YTDMSARAKVIGIMQEGKGSVPAVTGPANVEVILDRTPFYAEAGGQLADQGEILSDDGAV 526
           Y++++  AKV  +   G+ SV A++   +  V+LD TPFYAE+GGQ+ D+G +L   G  
Sbjct: 459 YSELTGNAKVTALYLNGE-SVSAISAGDDAVVVLDVTPFYAESGGQVGDKG-VLVAQGIE 516

Query: 527 LEVDDVQKPIKDLIVHQCRLTEGTLVVGAEVNANIDLARRGAIARSHTATHMVHKALREE 586
             V D QK       H+  LT G+L VG  + A +D   R     +H+ TH++H ALR+ 
Sbjct: 517 FAVSDTQK-FGQASGHKGTLTAGSLSVGQVLEAKVDKKLRHRTQLNHSVTHLLHAALRQV 575

Query: 587 LGPQATQRGSEDAPNRLRFDFQWSKAPAKSVISAVEERVNDKLRDNLAVTTKEMKFDDAI 646
           LG   TQ+GS   P RLRFDF   +A   + +  VEE VN ++R N  +   EM  D+A 
Sbjct: 576 LGTHVTQKGSLVDPERLRFDFSHFEAVKPAELKQVEELVNTQIRRNHELKVAEMAIDEAK 635

Query: 647 ALGAMHLFGEKYGDVVRVVSIGEDGWSRELCGGTHVDHVGKIGMVNILSEASIGSGVRRV 706
             GAM LFGEKY   VRVV++G+  +S ELCGGTHV   G IG+  I SE  I +GVRR+
Sbjct: 636 EKGAMALFGEKYDAQVRVVTMGD--FSIELCGGTHVGRTGDIGLFKITSEGGIAAGVRRI 693

Query: 707 DAVVGQGAYDFNAREHALVSQLSDKLNARPDELAERVNTLLAKLKESDRRLASMYEAQLA 766
           +AV G  A  + A++ A + + +  L      +  ++   L K+K+ ++ +  + +   A
Sbjct: 694 EAVTGAAAMAYVAQQQAQLEEAAALLKGDTQSVVAKLKAQLDKMKQLEKDMQQLKDKLAA 753

Query: 767 AAVPALVEDAKNSAAPVKVAIKNVGHFGAVDALRKTVLDVRGQLGEDAPAVVALAGVNED 826
           AA   L  DA      V V IK +    A  ALR     ++ +L +   + V L GV ++
Sbjct: 754 AASADLAGDAV-VVNGVNVLIKKLEGVEA-GALR----GLQDELKQKLKSAVILLGVAQE 807

Query: 827 DK-PMVAVATNEAARKAGIKAGDLVRGASKILGGGGGGKPDFAQGGGADASKINEAL 882
            K  ++A  +N+   K  +KAG+LV   +  +GG GGG+PD AQ GG+    ++ AL
Sbjct: 808 GKVNLIAGVSNDLVGK--VKAGELVAMVAAQVGGKGGGRPDMAQAGGSQPENLDAAL 862