Pairwise Alignments

Query, 891 a.a., ATP-dependent DNA helicase PcrA from Bifidobacterium breve UCC2003

Subject, 771 a.a., Probable ATP-dependent DNA helicase II UvrD1 from Mycobacterium tuberculosis H37Rv

 Score =  674 bits (1739), Expect = 0.0
 Identities = 371/694 (53%), Positives = 465/694 (67%), Gaps = 40/694 (5%)

Query: 12  AQELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITF 71
           A +L+  LNPQQ +AV + G  LLI AGAGSGKT VLTRRIA++++  G    QILAITF
Sbjct: 16  ADQLLDGLNPQQRQAVVHEGSPLLIVAGAGSGKTAVLTRRIAYLMAARGVGVGQILAITF 75

Query: 72  TNKAAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSI-GLKSGFSIYDSADSER 130
           TNKAAAEMRER+  L+G  A+ MWVSTFHS CVRILR     I GL S FSIYD+ DS R
Sbjct: 76  TNKAAAEMRERVVGLVGEKARYMWVSTFHSTCVRILRNQAALIEGLNSNFSIYDADDSRR 135

Query: 131 LVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGTVGD 190
           L++++  +  LDIKRY+PR +   IS+LKN L    + LA    D              D
Sbjct: 136 LLQMVGRDLGLDIKRYSPRLLANAISNLKNELIDPHQALAGLTEDSD------------D 183

Query: 191 LEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPAVAEYYHHRFRYILVDEYQDT 250
           L    A +Y EY+ RL  ANA+DFDDLIG TV +L+  P +A+YY  RFR++LVDEYQDT
Sbjct: 184 LARAVASVYDEYQRRLRAANALDFDDLIGETVAVLQAFPQIAQYYRRRFRHVLVDEYQDT 243

Query: 251 NHAQYVLVRELAGVDTGEKAIPGSPNAGKSGPAWITVVGDSDQSIYAFRGADIRNIQDFE 310
           NHAQYVLVREL G D+ +   PG           + VVGD+DQSIYAFRGA IRNI+DFE
Sbjct: 244 NHAQYVLVRELVGRDSNDGIPPGE----------LCVVGDADQSIYAFRGATIRNIEDFE 293

Query: 311 QDFPNAKTIMLEQNYRSTQTILDAANAVISNNEGRKPKKLWTALGKGEPIVGYAADNAQQ 370
           +D+P+ +TI+LEQNYRSTQ IL AAN+VI+ N GR+ K+LWT  G GE IVGY ADN   
Sbjct: 294 RDYPDTRTILLEQNYRSTQNILSAANSVIARNAGRREKRLWTDAGAGELIVGYVADNEHD 353

Query: 371 EAQWVATEIARLHAEEDIAYSDMAIMYRANAQSRSLEEALINAGLPYQLVGGTKFYERRE 430
           EA++VA EI  L    +I Y+D+A+ YR N  SRSLEE LI AG+PY++VGG +FYER+E
Sbjct: 354 EARFVAEEIDALAEGSEITYNDVAVFYRTNNSSRSLEEVLIRAGIPYKVVGGVRFYERKE 413

Query: 431 IKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGILLAYARERGTSFFYALMHLDEI 490
           I+D +AYL+ L NP D V+LRRILN P+RG+GDRAE  +  YA   G  F  AL+   + 
Sbjct: 414 IRDIVAYLRVLDNPGDAVSLRRILNTPRRGIGDRAEACVAVYAENTGVGFGDALVAAAQ- 472

Query: 491 QDVPTRTATQLKAFRDLMGELSQFTRAHDAKPSEIVAEVLEKSGLRAELEKSVDPQDASR 550
             VP       KA    +    +     D    E+V  VLE++G R ELE S DPQ+ +R
Sbjct: 473 GKVPMLNTRAEKAIAGFVEMFDELRGRLDDDLGELVEAVLERTGYRRELEASTDPQELAR 532

Query: 551 LENLSQLQSTAAEF-------------EQNTPD-ATLSAFLETTALVADSDQLPGEAEDS 596
           L+NL++L S A EF             +++ PD   L+ FLE  +LVAD+D++P     +
Sbjct: 533 LDNLNELVSVAHEFSTDRENAAALGPDDEDVPDTGVLADFLERVSLVADADEIP--EHGA 590

Query: 597 GKVTLMTLHTAKGLEYPVVFLTGMEQGTFPHSRSMEDTTELQEERRLAYVGITRAKRRLY 656
           G VTLMTLHTAKGLE+PVVF+TG E G FPH R++++ TEL EERRLAYVGITRA++RLY
Sbjct: 591 GVVTLMTLHTAKGLEFPVVFVTGWEDGMFPHMRALDNPTELSEERRLAYVGITRARQRLY 650

Query: 657 VTRAAVRSQWGQAADMMPSQFLDEIPYSLIGWKR 690
           V+RA VRS WGQ      S+FL EIP  LI W+R
Sbjct: 651 VSRAIVRSSWGQPMLNPESRFLREIPQELIDWRR 684



 Score = 55.5 bits (132), Expect = 1e-11
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 9/89 (10%)

Query: 812 RHTTPK---------SGSAGSSMPSSKLAKDNGLNISDFAVGDMISHDQYGLGKVTDAQD 862
           R T PK         +G  GS+ PS   +  +   +    VGD ++HD+YGLG+V +   
Sbjct: 683 RRTAPKPSFSAPVSGAGRFGSARPSPTRSGASRRPLLVLQVGDRVTHDKYGLGRVEEVSG 742

Query: 863 KGRNSVITVDFGSAGVKRLMLRVAPIEKL 891
            G +++  +DFGS+G  +LM   AP+ KL
Sbjct: 743 VGESAMSLIDFGSSGRVKLMHNHAPVTKL 771