Pairwise Alignments

Query, 891 a.a., ATP-dependent DNA helicase PcrA from Bifidobacterium breve UCC2003

Subject, 722 a.a., DNA helicase II (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  457 bits (1177), Expect = e-133
 Identities = 294/746 (39%), Positives = 404/746 (54%), Gaps = 50/746 (6%)

Query: 15  LVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILAITFTNK 74
           L+  LN +Q EAV     ++L+ AGAGSGKTRVLT RIAW++      P  ILA+TFTNK
Sbjct: 6   LLDGLNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVTFTNK 65

Query: 75  AAAEMRERLGSLIGPVAQRMWVSTFHSACVRILRRDGKSIGLKSGFSIYDSADSERLVKI 134
           AAAEMRER+  + G    RMW+ TFH    R+LR   +  GL   F I DS D  RL+K 
Sbjct: 66  AAAEMRERVEKVAGTNMGRMWIGTFHGLAHRLLRTHFQDAGLPQSFQILDSDDQLRLLKR 125

Query: 135 IATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGTVG-DLEA 193
           I    NLD K+Y PR   G+I+  K+                  G R       G  +E 
Sbjct: 126 ILKSLNLDEKQYPPRQAQGYINGKKDQ-----------------GLRPKHIDAGGFPIEQ 168

Query: 194 IYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPAVAEYYHHRFRYILVDEYQDTNHA 253
               IY  Y+     A  VDF +++ R  EL    P +  +Y  RF++ILVDE+QDTN  
Sbjct: 169 NLLKIYQVYQESCDRAGLVDFAEILLRAHELWLNKPHLLAHYQERFKHILVDEFQDTNAI 228

Query: 254 QYVLVRELAGVDTGEKAIPGSPNAGKSGPAWITVVGDSDQSIYAFRGADIRNIQDFEQDF 313
           QY  +R LAG                   A + +VGD DQSIY +RGA + N+  F +DF
Sbjct: 229 QYAWIRMLAG-----------------QTANVMIVGDDDQSIYGWRGAQVENLHRFLKDF 271

Query: 314 PNAKTIMLEQNYRSTQTILDAANAVISNNEGRKPKKLWTALGKGEPIVGYAADNAQQEAQ 373
           P A TI LEQNYRS   IL A+NA+I+NN  R  K+LWT    GEPI  Y A N   EA+
Sbjct: 272 PTATTIRLEQNYRSKGNILKASNALIANNPERLGKELWTDEADGEPISLYCAFNEMDEAR 331

Query: 374 WVATEIARLHAEEDIAYSDMAIMYRANAQSRSLEEALINAGLPYQLVGGTKFYERREIKD 433
           ++   I   + E+    SD AI+YR+NAQSR LEEAL++ GL Y++ GG +F+ER+EIKD
Sbjct: 332 FIVGRINDWY-EKGGNLSDCAILYRSNAQSRVLEEALLHKGLAYRIYGGLRFFERQEIKD 390

Query: 434 ALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGILLAYARERGTSFFYALMHLDEIQDV 493
           A+ Y++ + N +DD    R++N P RG+GDR   IL   AR++  + + A + L + + +
Sbjct: 391 AMGYMRLISNKNDDAAFERVVNTPPRGIGDRTLDILRTTARQQELTLWQACLRLLDEKVL 450

Query: 494 PTRTATQLKAFRDLMGELSQFTRAHDAKPSEIVAEVLEKSGLRAELEKSVDPQDASRLEN 553
             R A+ ++ F DL+  L + T+  D     +   V++ SGL+A  E     +  +R+EN
Sbjct: 451 AGRAASAVRGFMDLIVTLQEDTQ--DMALYRMADTVIQASGLKAMYEAEKGEKAHARIEN 508

Query: 554 LSQLQSTAAEFE--QNTPD-ATLSAFLETTALVADSDQLPGEAEDSGKVTLMTLHTAKGL 610
           L +L + A  FE  +   D   L+AFL   AL A   Q     +    V LMTLH+AKGL
Sbjct: 509 LEELVTAARTFEMPEELEDMGELNAFLSHAALEAGEGQADAFTD---AVQLMTLHSAKGL 565

Query: 611 EYPVVFLTGMEQGTFPHSRSMEDTTELQEERRLAYVGITRAKRRLYVTRAAVRSQWGQAA 670
           E+ +VF+ G+E+G FP   ++E+   L EERRL YVG+TRA  +LY+T A  R  +G+  
Sbjct: 566 EFTMVFMAGVEEGIFPSKMALEEGDRLDEERRLCYVGMTRAMEKLYITYAESRRIYGRED 625

Query: 671 DMMPSQFLDEIPYSLIGWKRREAGVERMRAN----WESDGFADDYGGWDDDDFGGTTFGG 726
              PS+F+ EIP   +   R +A V    AN     +    A+D G           FG 
Sbjct: 626 YARPSRFIKEIPPQYVDEIRLKAQVSTPMANNRFSTQKSAVANDTGFSVGQRVHHPKFGD 685

Query: 727 SSTFGSRGSGSSYGSRSHYGSSSYGS 752
                  GSG+   +R     S +GS
Sbjct: 686 GKVTNFEGSGAQ--ARVQVNFSDFGS 709



 Score = 40.0 bits (92), Expect = 5e-07
 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 6/76 (7%)

Query: 814 TTPKSGSAGSSMPSSKLAKDNGLNISDFAVGDMISHDQYGLGKVTDAQDKGRNSVITVDF 873
           +TP + +  S+  S+ +A D G     F+VG  + H ++G GKVT+ +  G  + + V+F
Sbjct: 651 STPMANNRFSTQKSA-VANDTG-----FSVGQRVHHPKFGDGKVTNFEGSGAQARVQVNF 704

Query: 874 GSAGVKRLMLRVAPIE 889
              G K L++  A +E
Sbjct: 705 SDFGSKWLVVAYARLE 720