Pairwise Alignments

Query, 891 a.a., ATP-dependent DNA helicase PcrA from Bifidobacterium breve UCC2003

Subject, 805 a.a., DNA helicase II from Caulobacter crescentus NA1000

 Score =  487 bits (1254), Expect = e-141
 Identities = 337/879 (38%), Positives = 468/879 (53%), Gaps = 118/879 (13%)

Query: 9   ARSAQELVGDLNPQQAEAVQYRGQALLIGAGAGSGKTRVLTRRIAWILSQFGAWPSQILA 68
           A +A   +  LNP+Q EAV+     LL+ AGAG+GKTRVLT R+A IL+   A P +ILA
Sbjct: 33  AGAAPGYLDGLNPEQREAVETTEGPLLVLAGAGTGKTRVLTTRLAHILATGRARPWEILA 92

Query: 69  ITFTNKAAAEMRERLGSLIGPVAQRM-WVSTFHSACVRILRRDGKSIGLKSGFSIYDSAD 127
           +TFTNKAA EMRER+  +IGP A+ + W+ TFHS   +ILRR  + IGLKS ++I D+ D
Sbjct: 93  VTFTNKAAREMRERITHIIGPEAEGLRWLGTFHSVAAQILRRHAELIGLKSNYTIIDTDD 152

Query: 128 SERLVKIIATEFNLDIKRYTPRSILGHISDLKNNLTGWKENLAVHAPDFTPGQRGYQFGT 187
           +ERL+K +    N+D KR+TPR +   I   KN   GW        PD  P     +F  
Sbjct: 153 NERLLKQLIEAENIDAKRWTPRILSQIIDGWKNR--GW-------TPDRVPTSEAGEFAN 203

Query: 188 VGDLEAIYAVIYAEYEHRLALANAVDFDDLIGRTVELLRTDPAVAEYYHHRFRYILVDEY 247
              +      +Y +Y+ RL + NA DF DL+   + L    P V + +  RF+Y++VDEY
Sbjct: 204 GKGIS-----LYRQYQERLRILNACDFGDLLLHNISLFTGHPDVLDEFQQRFKYVMVDEY 258

Query: 248 QDTNHAQYVLVRELAGVDTGEKAIPGSPNAGKSGPAWITVVGDSDQSIYAFRGADIRNIQ 307
           QDTN AQY+ +R LA                  G   +  VGD DQSIY +RGA++ NI 
Sbjct: 259 QDTNVAQYLWLRLLA-----------------QGRQNVCCVGDDDQSIYGWRGAEVDNIL 301

Query: 308 DFEQDFPNAKTIMLEQNYRSTQTILDAANAVISNNEGRKPKKLWTALGKGEPIVGYAADN 367
            FE+DFP AK + LE NYRST+ IL AA+ +I+ N+GR  K LWT    GE +      +
Sbjct: 302 RFERDFPGAKVVRLECNYRSTEHILAAASGLITANKGRLGKTLWTPSKGGEKVKVSGVWD 361

Query: 368 AQQEAQWVATEIARLHAEEDIAYSDMAIMYRANAQSRSLEEALINAGLPYQLVGGTKFYE 427
            + E++ +A EI R   +    YS MAI+ RA+ Q R+ EE  +   +PY++VGG +F+E
Sbjct: 362 GEAESRLIADEIERAK-KAGRKYSQMAILVRASFQMRAFEERFVLLQIPYKVVGGPRFFE 420

Query: 428 RREIKDALAYLQALVNPDDDVNLRRILNVPKRGLGDRAEGILLAYARERGTSFFYALMHL 487
           R EI+DA AYL+ + +PDDD+   RI+N PKRG+GD +   LL  AR  G S   A   +
Sbjct: 421 RAEIRDAHAYLRLIQSPDDDLAFERIVNTPKRGIGDTSVQKLLQIARLGGISTVEAARQI 480

Query: 488 DEIQDVPTRTATQLKAF-RDLMGELSQFTRAHDAKPSEIVAEVLEKSGLRAELEKSVDPQ 546
               ++P RT T L  F RDL    S    AH  +   ++  VLE+SG    L     P 
Sbjct: 481 ITSDELPARTRTALSNFIRDLDRWRSLVGTAHHQR---LLETVLEESGYTDALRLDKGPT 537

Query: 547 DASRLENLSQLQSTAAEFEQNTPDATLSAFLETTALVADSD-QLPGEAEDSGKVTLMTLH 605
             +RLENL +L  +   F+      TL A+LE  +LV D D +  G+A     V +MTLH
Sbjct: 538 SQTRLENLKELVQSMGAFD------TLEAYLEHVSLVMDLDREATGDA-----VWIMTLH 586

Query: 606 TAKGLEYPVVFLTGMEQGTFPHSRSMEDTTE--LQEERRLAYVGITRAKRRLYVTRAAVR 663
           +AKGLE+P+VFL G E+G FP  RSM+D  E  L+EERRLAYVGITRA+    ++  A R
Sbjct: 587 SAKGLEFPLVFLPGWEEGVFPSQRSMDDKGEKGLEEERRLAYVGITRAREEARISFVANR 646

Query: 664 SQWGQAADMMPSQFLDEIPYSLIGWKRREAGVERMRANWESDGFADDYGGWDDDDFGGTT 723
             +G+    +PS+F+DE+P                 A+ ++      YGG          
Sbjct: 647 QVYGRWTSQLPSRFVDELPI----------------AHVDAASETGYYGGGP-------- 682

Query: 724 FGGSSTFGSRGSGSSYGSRSHYGSSSYGSGSSYGSRSGGSSYGSRSSSSYGSRSRSGSSY 783
            G  ST  SR            G+S++ +GS     S G       +S +G R   G S+
Sbjct: 683 -GMQSTAASRWDDP--------GTSAFQAGS---YDSPGWKRAQERTSGFGER---GGSW 727

Query: 784 GSGSGSSYGSRSRSSSASGGTRAGKVTTRHTTPKSGSAGSSMPSSKLAKDNGLNISDFAV 843
               G   GS +RS+   G  R   V              S P++          S +A 
Sbjct: 728 RGAQGVRSGSSARSAPIEGEGRLVAV--------------SAPTN----------SAYAR 763

Query: 844 GDMISHDQYGLGKVTDAQDKGRNSVITVDFGSAGVKRLM 882
           GD + H ++G GKVT  +     + +TV F  AG K+++
Sbjct: 764 GDRVFHVKFGYGKVTGIE----GNKLTVAFDKAGEKKVI 798