Pairwise Alignments

Query, 217 a.a., DNA-binding response regulator from Bifidobacterium breve UCC2003

Subject, 214 a.a., DNA-binding response regulator, LuxR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 90.5 bits (223), Expect = 2e-23
 Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 12/207 (5%)

Query: 3   IAIVDDDPIVCQSLETILTATGTADVLWTANDGGAAVQQYFASPANHPDILLIDIQMPGK 62
           I +VDD  +V   +  IL       V+  A DG  AVQ    +  N  D++L+D+ MP  
Sbjct: 4   IYLVDDHELVRTGIRRILEDERGIKVVGEAPDGETAVQW---ARQNEADVILMDMNMPVM 60

Query: 63  DGLDAAREILPKDPAARILFLTTFADKDYIAQAMALGAKGYLIK-QDVAAVGPALQAVMA 121
            GL+A R+IL   P A+I+ LT   +  + ++ M  GA GYL K      V  A++ V  
Sbjct: 61  GGLEATRKILRYQPHAKIIVLTVHTEDPFPSKVMQAGASGYLTKGATPPEVLQAIRQVSR 120

Query: 122 GQVVLGAEILGKLTERTTNPADSSNSGNANDSATKLLNDREREIAMLVAKGLDNRDIAAK 181
           GQ  L  EI  ++     NPAD        ++  K L++RE +I +++  G    DI+ +
Sbjct: 121 GQRYLSPEIAQQMALSQFNPAD--------ENPFKALSERELQIMLMITNGEKVNDISEQ 172

Query: 182 LFLSEGTVRNRISVILDKLGLTNRTQL 208
           L LS  TV +    +  KLG++   +L
Sbjct: 173 LNLSPKTVNSYRYRLFAKLGISGDVEL 199