Pairwise Alignments
Query, 491 a.a., 30S ribosomal protein S1 from Bifidobacterium breve UCC2003
Subject, 555 a.a., ribosomal protein S1 (NCBI ptt file) from Shewanella oneidensis MR-1
Score = 270 bits (689), Expect = 1e-76
Identities = 140/335 (41%), Positives = 218/335 (65%), Gaps = 7/335 (2%)
Query: 33 FDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDEVVEVGDTIEALVVT 92
F G +V GTVV I++ VL+D G K+E IP+ + K+ + VGD ++ + +
Sbjct: 18 FRPGSIVRGTVVAIENGMVLVDAGLKSESPIPAEQF---KNAQGVLEIAVGDEVDVALDS 74
Query: 93 KEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDI-GLRGFLPAS 151
ED G LS+++A+ AW +EK E V G + VKGG V++ G+R FLP S
Sbjct: 75 VEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGFTVELNGIRAFLPGS 134
Query: 152 LVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQI 211
LV++R VRD + ++++ K+++LD+ RNNVV+SRR +E S R+ L L++GQ
Sbjct: 135 LVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESESSAERDALLENLQEGQA 194
Query: 212 REGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVGDKVTVEVLDVDLDRER 271
+G+V ++ ++GAFVDLGGVDGL+H+++++WK + HPSE+V VGD++ V+VL D +R R
Sbjct: 195 VKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTR 254
Query: 272 ISLSLKATQEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDGIEGLVHISEL--ANR 329
+SL LK EDPW ++ + + G+VT + +G F+ +E+G+EGLVH+SE+ N+
Sbjct: 255 VSLGLKQLGEDPWLEISKRYPENTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNK 314
Query: 330 HVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQ 364
++ +P VV G+ V V V+D+D +RRRISL LKQ
Sbjct: 315 NI-HPSKVVNLGDEVEVLVLDIDEERRRISLGLKQ 348
Score = 164 bits (416), Expect = 6e-45
Identities = 122/413 (29%), Positives = 214/413 (51%), Gaps = 27/413 (6%)
Query: 86 IEALVVTKEDKEGRLILSKKRAQYERAWGD----IEKIKEADGVVEGTVIEAVKGGLIVD 141
+E V+ + K +++S++ + + +E ++E V +G V G VD
Sbjct: 152 LEFKVIKLDQKRNNVVVSRRAVIESESSAERDALLENLQEGQAV-KGIVKNLTDYGAFVD 210
Query: 142 IG-LRGFLPASLVEMRRVRDLSPYI--GQKIKAKILELDKNRNNVVLSRRQYLEETQSEV 198
+G + G L + + +RV+ S + G +I K+L+ D+ R V L +Q E+ E+
Sbjct: 211 LGGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLGEDPWLEI 270
Query: 199 RETFLSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHID-HPSEVVKVGD 256
+ + K G V+++ ++G FV++ GV+GL+HVSE+ W + + HPS+VV +GD
Sbjct: 271 SKRYPENTKL----TGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNLGD 326
Query: 257 KVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVEDG 316
+V V VLD+D +R RISL LK + +PW FA + G V GK+ I FG+FI ++ G
Sbjct: 327 EVEVLVLDIDEERRRISLGLKQCKTNPWDDFATRYNKGDKVSGKIKSITDFGIFIGLDGG 386
Query: 317 IEGLVHISELA-NRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQANDSVDP---- 371
I+GLVH+S+++ N E+ + K G+ + V+ VD +R RISL +KQ D DP
Sbjct: 387 IDGLVHLSDISWNGTGEDAVSEYKKGDEIHAVVLSVDPERERISLGVKQTED--DPFNAY 444
Query: 372 -ASEDFDPAIYGMPAEYDEQG-NYKYPEGFDPNTNEWIAGYEKQREEWEAQYAAAHDLWE 429
A + ++G + D +G + + + +A ++R E + + D E
Sbjct: 445 LADKKKGTIVHGTVSAVDAKGVTVELADTVEGYIR--VADISRERIEDASTVYSVGDAIE 502
Query: 430 EHKEFVAKELANAAESAAADGQNQKEEKPVEETSNYSSAAPATGTLADSDQLA 482
+F+ + N + S + +++ EEK V T N A + +A++ + A
Sbjct: 503 --AKFMGVDRKNRSISLSIKAKDEAEEKEVMATLNKQEDAVISNAMAEAFKAA 553
Score = 160 bits (405), Expect = 1e-43
Identities = 107/374 (28%), Positives = 196/374 (52%), Gaps = 21/374 (5%)
Query: 4 NNIEVTKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVI 63
NN+ V++ A+ E + D+ ++N +G V+G V + +D+G +G++
Sbjct: 164 NNVVVSRRAV----IESESSAERDALLENLQEGQAVKGIVKNLTDYGAFVDLG-GVDGLL 218
Query: 64 PSRELSIKKDVDPDEVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEAD 123
+++ K+ P E+V VGD I V+ + + R+ L K+ E W +I K +
Sbjct: 219 HITDMAWKRVKHPSEIVNVGDEINVKVLKYDRERTRVSLGLKQLG-EDPWLEISKRYPEN 277
Query: 124 GVVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP----YIGQKIKAKILELD 177
+ G V G V+I G+ G + S ++ +++ P +G +++ +L++D
Sbjct: 278 TKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTN-KNIHPSKVVNLGDEVEVLVLDID 336
Query: 178 KNRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL-GGVDGLIH 236
+ R + L L++ ++ + F ++ KG G + SI +FG F+ L GG+DGL+H
Sbjct: 337 EERRRISLG----LKQCKTNPWDDFATRYNKGDKVSGKIKSITDFGIFIGLDGGIDGLVH 392
Query: 237 VSELSWKHI--DHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPG 294
+S++SW D SE K GD++ VL VD +RERISL +K T++DP+ + G
Sbjct: 393 LSDISWNGTGEDAVSE-YKKGDEIHAVVLSVDPERERISLGVKQTEDDPFNAYLADKKKG 451
Query: 295 QIVKGKVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFVKVIDVDLD 354
IV G V+ + GV + + D +EG + +++++ +E+ TV G+ + K + VD
Sbjct: 452 TIVHGTVSAVDAKGVTVELADTVEGYIRVADISRERIEDASTVYSVGDAIEAKFMGVDRK 511
Query: 355 RRRISLSLKQANDS 368
R ISLS+K +++
Sbjct: 512 NRSISLSIKAKDEA 525
Score = 42.7 bits (99), Expect = 3e-08
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Query: 7 EVTKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSR 66
E ++++ TE+D A + K G +V GTV +D V +++ EG I
Sbjct: 425 ERERISLGVKQTEDDPFNAYLADKKK---GTIVHGTVSAVDAKGVTVELADTVEGYIRVA 481
Query: 67 ELSIKKDVDPDEVVEVGDTIEALVVTKEDKEGRLILS---KKRAQYERAWGDIEKIKEAD 123
++S ++ D V VGD IEA + + K + LS K A+ + + K+ D
Sbjct: 482 DISRERIEDASTVYSVGDAIEAKFMGVDRKNRSISLSIKAKDEAEEKEVMATLN--KQED 539
Query: 124 GVVEGTVIEAVK 135
V+ + EA K
Sbjct: 540 AVISNAMAEAFK 551