Pairwise Alignments

Query, 491 a.a., 30S ribosomal protein S1 from Bifidobacterium breve UCC2003

Subject, 577 a.a., ribosomal protein S1 (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  272 bits (695), Expect = 3e-77
 Identities = 130/352 (36%), Positives = 227/352 (64%), Gaps = 5/352 (1%)

Query: 15  DIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDV 74
           D+  E      + S   + ++G +V+G +V++  D VL+D+ +K+EG I + E    +D 
Sbjct: 16  DMSFESALENYLSSDFGDLEEGSIVKGEIVRLGDDYVLVDVNFKSEGQIAANEF---RDA 72

Query: 75  DPDEVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAV 134
           + D ++ VGD ++  VV K + EG + LS ++A+  + +  +E+++E +GV++G ++  +
Sbjct: 73  NGDLIIGVGDRVDVFVVRKNEMEGTITLSYEKAKRMQLFDQLEEVQEKNGVIKGRIVRRI 132

Query: 135 KGGLIVDIG-LRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEE 193
           KGG  VD+G +  FLP S V++R V D+   + Q+ + ++L++++ R+NV++SRR  LEE
Sbjct: 133 KGGYTVDLGGVEAFLPGSHVDLRPVPDMDALVNQEYEFRVLKINRRRSNVIVSRRVLLEE 192

Query: 194 TQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVK 253
            +   R+  L  L++GQ+ +G   +I  +G FVDLGG+DGL+H++++SWK I HP E+V 
Sbjct: 193 ERDSKRQDLLRTLEEGQVVKGKAKNITEYGVFVDLGGLDGLLHITDMSWKRIRHPKELVS 252

Query: 254 VGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISV 313
           +G ++ ++VL  D D +++SL +K    DPWQ        G   +GKVT +V +G F+ +
Sbjct: 253 LGQELELKVLSFDRDSQKVSLGMKQLVADPWQDITAKFPEGLRGQGKVTNLVDYGAFVEL 312

Query: 314 EDGIEGLVHISELA-NRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQ 364
           E G+EGLVHISE++  R + +P  +V+ G+ V V ++ VD D++RISL +KQ
Sbjct: 313 EPGVEGLVHISEMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKKRISLGMKQ 364



 Score =  192 bits (487), Expect = 3e-53
 Identities = 120/357 (33%), Positives = 198/357 (55%), Gaps = 15/357 (4%)

Query: 19  EEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDE 78
           EE+        ++  ++G +V+G    I    V +D+G   +G++   ++S K+   P E
Sbjct: 191 EEERDSKRQDLLRTLEEGQVVKGKAKNITEYGVFVDLG-GLDGLLHITDMSWKRIRHPKE 249

Query: 79  VVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVV-EGTVIEAVKGG 137
           +V +G  +E  V++ +    ++ L  K+   +  W DI   K  +G+  +G V   V  G
Sbjct: 250 LVSLGQELELKVLSFDRDSQKVSLGMKQLVAD-PWQDITA-KFPEGLRGQGKVTNLVDYG 307

Query: 138 LIVDI--GLRGFLPASLVEM-RRVRDLSPYI--GQKIKAKILELDKNRNNVVLSRRQYLE 192
             V++  G+ G +  S +   R++R  S  +  G +++  IL +D ++  + L  +Q   
Sbjct: 308 AFVELEPGVEGLVHISEMSWTRKLRHPSQMVRVGDEVEVVILGVDPDKKRISLGMKQVKP 367

Query: 193 ETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL-GGVDGLIHVSELSW-KHIDHPSE 250
                V E +     +G I EGV+ +I  FG F+ +  G+DGLIHVS++SW K I HP+E
Sbjct: 368 NPWEVVAEKY----PEGTILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNE 423

Query: 251 VVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKGKVTKIVQFGVF 310
           + KVGD V  +VL VD + E+ +L +K   EDPW R   T+  G +V G VT I  FG+F
Sbjct: 424 MYKVGDVVQAKVLTVDQENEKFTLGVKQLAEDPWSRVPATYPVGTLVTGSVTNITDFGLF 483

Query: 311 ISVEDGIEGLVHISELANRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQAND 367
           + VE+GIEGLVH+SE++ + +++P  + K G+ +  KVI V  + RR+ LS+KQ  D
Sbjct: 484 VEVEEGIEGLVHVSEISQKKIKSPSEIYKEGQEIQAKVIHVSAEERRLGLSIKQLKD 540



 Score =  100 bits (249), Expect = 1e-25
 Identities = 71/267 (26%), Positives = 138/267 (51%), Gaps = 13/267 (4%)

Query: 27  DSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELS-IKKDVDPDEVVEVGDT 85
           D T K F +G   +G V  +      +++    EG++   E+S  +K   P ++V VGD 
Sbjct: 285 DITAK-FPEGLRGQGKVTNLVDYGAFVELEPGVEGLVHISEMSWTRKLRHPSQMVRVGDE 343

Query: 86  IEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDI--G 143
           +E +++  +  + R+ L  K+ +    W  + +      ++EG +    + G+ + I  G
Sbjct: 344 VEVVILGVDPDKKRISLGMKQVK-PNPWEVVAEKYPEGTILEGVIKNITEFGMFIGIEDG 402

Query: 144 LRGFLPASLVEM-RRVRDLSPY--IGQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRE 200
           + G +  S +   +++R  +    +G  ++AK+L +D+      L  +Q  E+  S V  
Sbjct: 403 IDGLIHVSDISWTKKIRHPNEMYKVGDVVQAKVLTVDQENEKFTLGVKQLAEDPWSRVPA 462

Query: 201 TFLSQLKKGQIREGVVSSIVNFGAFVDLG-GVDGLIHVSELSWKHIDHPSEVVKVGDKVT 259
           T+      G +  G V++I +FG FV++  G++GL+HVSE+S K I  PSE+ K G ++ 
Sbjct: 463 TY----PVGTLVTGSVTNITDFGLFVEVEEGIEGLVHVSEISQKKIKSPSEIYKEGQEIQ 518

Query: 260 VEVLDVDLDRERISLSLKATQEDPWQR 286
            +V+ V  +  R+ LS+K  +++  +R
Sbjct: 519 AKVIHVSAEERRLGLSIKQLKDEEERR 545



 Score = 61.6 bits (148), Expect = 7e-14
 Identities = 42/179 (23%), Positives = 87/179 (48%), Gaps = 6/179 (3%)

Query: 31  KNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDV-DPDEVVEVGDTIEAL 89
           + + +G ++EG +  I    + + I    +G+I   ++S  K +  P+E+ +VGD ++A 
Sbjct: 375 EKYPEGTILEGVIKNITEFGMFIGIEDGIDGLIHVSDISWTKKIRHPNEMYKVGDVVQAK 434

Query: 90  VVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIVDI--GLRGF 147
           V+T + +  +  L  K+   E  W  +        +V G+V      GL V++  G+ G 
Sbjct: 435 VLTVDQENEKFTLGVKQLA-EDPWSRVPATYPVGTLVTGSVTNITDFGLFVEVEEGIEGL 493

Query: 148 LPASLVEMRRVRDLSPYI--GQKIKAKILELDKNRNNVVLSRRQYLEETQSEVRETFLS 204
           +  S +  ++++  S     GQ+I+AK++ +      + LS +Q  +E +    + F S
Sbjct: 494 VHVSEISQKKIKSPSEIYKEGQEIQAKVIHVSAEERRLGLSIKQLKDEEERRKPKEFRS 552