Pairwise Alignments
Query, 491 a.a., 30S ribosomal protein S1 from Bifidobacterium breve UCC2003
Subject, 569 a.a., SSU ribosomal protein S1P from Caulobacter crescentus NA1000
Score = 283 bits (724), Expect = 1e-80
Identities = 143/352 (40%), Positives = 230/352 (65%), Gaps = 6/352 (1%)
Query: 18 TEEDFIKAVDSTI--KNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVD 75
T +DF ++ ++ ++F +G +V+G VV I+ D ++D+G KTEG + +E + D +
Sbjct: 10 TRDDFEALLNDSMGGRDFAEGTVVKGKVVGIEKDFAIIDVGLKTEGRVQLKEFGV--DEN 67
Query: 76 PDEVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVK 135
V+ GDT+E + E+ G ++S+++A+ E AW +E + + V G ++ VK
Sbjct: 68 GKATVKAGDTVEVFLERLENAMGEAVISREKAKREEAWTRLEGVYARNEPVMGAIVGRVK 127
Query: 136 GGLIVDIG-LRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEET 194
GG VD+G FLP S V++R VRD+ P +G++ IL++D+ R N+V+SRR LEE
Sbjct: 128 GGFTVDLGGASAFLPGSQVDIRPVRDVGPLMGKEQPFAILKMDRPRGNIVVSRRAILEEA 187
Query: 195 QSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKV 254
++E R +SQL++G+IREGVV +I ++GAFVDLGG+DGL+HV+++SWK ++HPS+V+ V
Sbjct: 188 RAEQRTELVSQLQEGEIREGVVKNITDYGAFVDLGGIDGLLHVTDMSWKRVNHPSQVLAV 247
Query: 255 GDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKGKVTKIVQFGVFISVE 314
GD V V+++ ++ D +RISL +K Q DPW + G G++T I +G F+ +E
Sbjct: 248 GDTVKVQIVKINPDTQRISLGMKQLQSDPWDGVEAKYPVGAKFTGRITNITDYGAFVELE 307
Query: 315 DGIEGLVHISELA-NRHVENPETVVKPGETVFVKVIDVDLDRRRISLSLKQA 365
G+EGLVH+SE++ + +P +V + V V V+DVD +RR+SL LKQA
Sbjct: 308 AGVEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVVVLDVDPSKRRVSLGLKQA 359
Score = 146 bits (369), Expect = 2e-39
Identities = 102/317 (32%), Positives = 173/317 (54%), Gaps = 23/317 (7%)
Query: 74 VDPDEVVEVGDTI---EALVVTKEDKEGRLILSKKRAQYERAWGD-----IEKIKEADGV 125
VD V +VG + + + K D+ I+ +RA E A + + +++E + +
Sbjct: 146 VDIRPVRDVGPLMGKEQPFAILKMDRPRGNIVVSRRAILEEARAEQRTELVSQLQEGE-I 204
Query: 126 VEGTVIEAVKGGLIVDIG-LRGFLPASLVEMRRVRDLSPY--IGQKIKAKILELDKNRNN 182
EG V G VD+G + G L + + +RV S +G +K +I++++ +
Sbjct: 205 REGVVKNITDYGAFVDLGGIDGLLHVTDMSWKRVNHPSQVLAVGDTVKVQIVKINPDTQR 264
Query: 183 VVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDL-GGVDGLIHVSELS 241
+ L +Q QS+ + ++ G G +++I ++GAFV+L GV+GL+HVSE+S
Sbjct: 265 ISLGMKQL----QSDPWDGVEAKYPVGAKFTGRITNITDYGAFVELEAGVEGLVHVSEMS 320
Query: 242 W-KHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKGK 300
W K HP ++V +V V VLDVD + R+SL LK +PW+ F H G V+G+
Sbjct: 321 WTKKNVHPGKIVSTSQEVDVVVLDVDPSKRRVSLGLKQALANPWEAFLEAHPVGSTVEGE 380
Query: 301 VTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVV--KPGETVFVKVIDVDLDRRRI 358
V +FG+F+ +++ I+G+VH+S++ + V E + K G+ V KV+DVD+++ RI
Sbjct: 381 VKNATEFGLFVGLDNDIDGMVHLSDI-DWSVPGEEAMARYKKGDMVKAKVLDVDVEKERI 439
Query: 359 SLSLKQANDSVDPASED 375
SL +KQ + DP S D
Sbjct: 440 SLGIKQL--AGDPMSGD 454
Score = 112 bits (280), Expect = 3e-29
Identities = 97/370 (26%), Positives = 168/370 (45%), Gaps = 24/370 (6%)
Query: 5 NIEVTKVAINDIGTEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIP 64
NI V++ AI EE + + +G++ EG V I +D+G +G++
Sbjct: 175 NIVVSRRAI----LEEARAEQRTELVSQLQEGEIREGVVKNITDYGAFVDLG-GIDGLLH 229
Query: 65 SRELSIKKDVDPDEVVEVGDTIEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADG 124
++S K+ P +V+ VGDT++ +V R+ L K+ Q + W +E
Sbjct: 230 VTDMSWKRVNHPSQVLAVGDTVKVQIVKINPDTQRISLGMKQLQSD-PWDGVEAKYPVGA 288
Query: 125 VVEGTVIEAVKGGLIVDI--GLRGFLPASLVEMRRVRDLSP----YIGQKIKAKILELDK 178
G + G V++ G+ G + S + + +++ P Q++ +L++D
Sbjct: 289 KFTGRITNITDYGAFVELEAGVEGLVHVSEMSWTK-KNVHPGKIVSTSQEVDVVVLDVDP 347
Query: 179 NRNNVVLSRRQYLEETQSEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGG-VDGLIHV 237
++ V L +Q L E FL G EG V + FG FV L +DG++H+
Sbjct: 348 SKRRVSLGLKQALANPW----EAFLEAHPVGSTVEGEVKNATEFGLFVGLDNDIDGMVHL 403
Query: 238 SELSWKHIDHPSEV-VKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQI 296
S++ W + K GD V +VLDVD+++ERISL +K DP T+ Q
Sbjct: 404 SDIDWSVPGEEAMARYKKGDMVKAKVLDVDVEKERISLGIKQLAGDPMS--GDTYRKNQT 461
Query: 297 VKGKVTKIVQFGVFISVEDG---IEGLVHISELANRHVENPETVVKPGETVFVKVIDVDL 353
V VT++ G+ + + + + S+L+ E G+ V ++ +VD
Sbjct: 462 VTVTVTEVTSGGIEVRFGEDDAPMTAFIRKSDLSRDRQEQRPERFAVGDRVDAQITNVDK 521
Query: 354 DRRRISLSLK 363
RR+SLS+K
Sbjct: 522 AARRVSLSIK 531
Score = 64.3 bits (155), Expect = 1e-14
Identities = 65/269 (24%), Positives = 115/269 (42%), Gaps = 27/269 (10%)
Query: 27 DSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELS-IKKDVDPDEVVEVGDT 85
D + G G + I +++ EG++ E+S KK+V P ++V
Sbjct: 278 DGVEAKYPVGAKFTGRITNITDYGAFVELEAGVEGLVHVSEMSWTKKNVHPGKIVSTSQE 337
Query: 86 IEALVVTKEDKEGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGLIV--DIG 143
++ +V+ + + R+ L K+A W + VEG V A + GL V D
Sbjct: 338 VDVVVLDVDPSKRRVSLGLKQA-LANPWEAFLEAHPVGSTVEGEVKNATEFGLFVGLDND 396
Query: 144 LRGFLPASLVE--------MRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
+ G + S ++ M R + G +KAK+L++D + + L +Q +
Sbjct: 397 IDGMVHLSDIDWSVPGEEAMARYKK-----GDMVKAKVLDVDVEKERISLGIKQLAGDPM 451
Query: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDG----LIHVSELSWKHIDHPSEV 251
S +T+ +K Q V+ + + G V G D I S+LS + E
Sbjct: 452 SG--DTY----RKNQTVTVTVTEVTSGGIEVRFGEDDAPMTAFIRKSDLSRDRQEQRPER 505
Query: 252 VKVGDKVTVEVLDVDLDRERISLSLKATQ 280
VGD+V ++ +VD R+SLS+K+ +
Sbjct: 506 FAVGDRVDAQITNVDKAARRVSLSIKSLE 534